PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68388.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 347aa MW: 36677.7 Da PI: 4.751

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68388.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.9e-12	193	238	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L++l+P+a K +Ka++L + +eY+k Lq EPS68388.1 193 HSIAERLRRERIAERMKALQKLVPNA-----NKTDKASMLDEIIEYVKFLQ 238 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-16	186	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.199	188	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-16	190	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.02E-12	192	240	No hit	No description
Pfam	PF00010	2.2E-9	193	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	194	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGQYDGDNEF PATSAIDLLL NLHQIQSLHQ DMQQSQMLSS SEFDPAAAAA ASQDDFIEQM 60 LSSDPAAFPW ADGQQAAGIL EEPPPPQANS LTMLQHQFCN EWIDGNDAGE GASFASANLT 120 DDGSMAVKAL FDGFHGSIAE NSLPSQHYHH AQVLQTQNHG GAQPLAAAPS PTTAPPRQRV 180 RVRARRGQAT DPHSIAERLR RERIAERMKA LQKLVPNANK TDKASMLDEI IEYVKFLQLQ 240 AKVLSVTRLG GGAAHESLEG GVVTTASSSS SNDGGGLAAM EQQVAKLMDE DIGAAMQYLQ 300 GKGLCLVPVS LAAAVSHQKA EDAGPSSPTA SAMTLQSAKD AAGNSDK

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGQYDGDNEF PATSAIDLLL NLHQIQSLHQ DMQQSQMLSS SEFDPAAAAA ASQDDFIEQM  60
LSSDPAAFPW ADGQQAAGIL EEPPPPQANS LTMLQHQFCN EWIDGNDAGE GASFASANLT  120
DDGSMAVKAL FDGFHGSIAE NSLPSQHYHH AQVLQTQNHG GAQPLAAAPS PTTAPPRQRV  180
RVRARRGQAT DPHSIAERLR RERIAERMKA LQKLVPNANK TDKASMLDEI IEYVKFLQLQ  240
AKVLSVTRLG GGAAHESLEG GVVTTASSSS SNDGGGLAAM EQQVAKLMDE DIGAAMQYLQ  300
GKGLCLVPVS LAAAVSHQKA EDAGPSSPTA SAMTLQSAKD AAGNSDK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	202	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012844124.1	1e-98	PREDICTED: transcription factor bHLH66-like isoform X2
Swissprot	Q9ZUG9	1e-65	BH066_ARATH; Transcription factor bHLH66
TrEMBL	S8DYN8	0.0	S8DYN8_9LAMI; Uncharacterized protein
STRING	Migut.K00336.1.p	9e-98	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-43	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]