PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68365.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB

Protein Properties

Length: 129aa MW: 14939.2 Da PI: 10.377

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68365.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +vk +G g+W++ ++ g+ R++k+c++rw +yl EPS68365.1 14 KGAWTKEEDQRLITYVKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	57.9	2.2e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eEd+++++++ +lG++ W+ Ia +++ gRt++++k++w+++l EPS68365.1 67 RGNFSEEEDDIIIKLHSLLGNK-WSMIAGRLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.247	9	61	IPR017930	Myb domain
SMART	SM00717	5.7E-14	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.63E-31	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.01E-10	16	61	No hit	No description
PROSITE profile	PS51294	28.136	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-28	65	117	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.37E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLITYVK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SEEEDDIIIK LHSLLGNKWS MIAGRLPGRT DNEIKNYWNT HLKRRLISRG 120 VDPQTHRAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-31	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462415.1	1e-86	PREDICTED: transcription repressor MYB6-like
Refseq	XP_016738951.1	1e-86	PREDICTED: transcription repressor MYB6-like
Swissprot	P81395	1e-86	MYB30_ANTMA; Myb-related protein 330
TrEMBL	S8CNU4	9e-91	S8CNU4_9LAMI; Uncharacterized protein (Fragment)
STRING	Gorai.013G139200.1	4e-86	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	7e-88	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]