PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS68326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C2H2 | ||||||||
Protein Properties | Length: 158aa MW: 18133.2 Da PI: 10.6885 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 4.9e-06 | 20 | 39 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C k+F+r n++ H+ EPS68326.1 20 FSCHICRKTFNRYNNMQMHM 39 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 104 | 128 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ EPS68326.1 104 FACRkfGCGKTFAVKGDWRTHEKNC 128 679999***************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.91E-6 | 1 | 43 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.3E-5 | 20 | 39 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.993 | 20 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.8 | 20 | 42 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 22 | 42 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 66 | 99 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.2E-5 | 90 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.62E-5 | 90 | 126 | No hit | No description |
SMART | SM00355 | 42 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
CGKRYWIPTP SQILVGPLQF SCHICRKTFN RYNNMQMHMW GHGSEFRKGP ESLRGSQPAA 60 MLRLPCYCCV SGCKNNVNFP KAKALKDFRT LQTHYKRKHG AKAFACRKFG CGKTFAVKGD 120 WRTHEKNCGK RWFCACGSDF KHKRSLKDHV KSFGKGHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090357.1 | 2e-98 | zinc finger protein WIP3 | ||||
Refseq | XP_016577931.1 | 5e-98 | PREDICTED: zinc finger protein WIP3 | ||||
Refseq | XP_019199011.1 | 5e-98 | PREDICTED: zinc finger protein WIP3-like | ||||
Swissprot | Q8W031 | 2e-93 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | S8CTW6 | 1e-114 | S8CTW6_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009609728.1 | 2e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 8e-96 | WIP domain protein 5 |
Publications ? help Back to Top | |||
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