PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67701.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 671aa MW: 77296.7 Da PI: 8.2331

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67701.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.7e-21	55	148	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt ++++HnHel EPS67701.1 55 EFYCEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKSSSESKPQRNRKSSRCGCQAFMRISKSTemgMPEWRVTGFVNHHNHELL 148 6************9998877356667999*********9999999***************999766679***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-18	55	148	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-21	271	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.075	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.4E-7	556	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-4	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MMLVYNDPSD QRSLSFDETS SAEESPDATR QSLVSVNDHI PFIGQRFPTH DAAYEFYCEF 60 AKRCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKS SSESKPQRNR KSSRCGCQAF 120 MRISKSTEMG MPEWRVTGFV NHHNHELLEP NQVRFLPAYR MISESDKNRI LMFAKTGISV 180 QQMMRLLELE KCVEPGYLSF TEKDVRNLLQ TFRKVDSEDE SVDLLRMCRN IKDKDPDFRF 240 EFTLDSNARL ENIAWSYASS VQSYEIFGDT VVFDTTHRLN ALDMPLGIWV GVNNYGMPCF 300 FGCVLLREES LRSFSWALKA FTGFMNGKAP QTLLTDQNVC LKEAIGLEMP STKHALCIWH 360 IVSKFPSWFN AVLGERYNEW KGEFYRLYNL ETINEFEMGW RDMANSFGLH ANRHISGLYS 420 FRALWALPYL RNHFFAGLTT PGHSKSISAF IQRFLSAQTR LAHFVEQVAV AVDFRDQAGE 480 HQTMQQNIQN INLKTGAPME SHAASVLTPF AFSKLQEQLV SAAHYASYQT EDDWFLVRHH 540 TKLEGNGRKV YWAPREGIVC CSCHHFEFSG ILCRHALRVL STGNCFQIPE RYLPTRWRRV 600 SFHHGSRHHL QLQDHNGDHH HRDRVQMLQT MVSSLVSESA KSKERLDLAT EHVSALLSQI 660 RDCPLSLTGF R

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MMLVYNDPSD QRSLSFDETS SAEESPDATR QSLVSVNDHI PFIGQRFPTH DAAYEFYCEF  60
AKRCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKS SSESKPQRNR KSSRCGCQAF  120
MRISKSTEMG MPEWRVTGFV NHHNHELLEP NQVRFLPAYR MISESDKNRI LMFAKTGISV  180
QQMMRLLELE KCVEPGYLSF TEKDVRNLLQ TFRKVDSEDE SVDLLRMCRN IKDKDPDFRF  240
EFTLDSNARL ENIAWSYASS VQSYEIFGDT VVFDTTHRLN ALDMPLGIWV GVNNYGMPCF  300
FGCVLLREES LRSFSWALKA FTGFMNGKAP QTLLTDQNVC LKEAIGLEMP STKHALCIWH  360
IVSKFPSWFN AVLGERYNEW KGEFYRLYNL ETINEFEMGW RDMANSFGLH ANRHISGLYS  420
FRALWALPYL RNHFFAGLTT PGHSKSISAF IQRFLSAQTR LAHFVEQVAV AVDFRDQAGE  480
HQTMQQNIQN INLKTGAPME SHAASVLTPF AFSKLQEQLV SAAHYASYQT EDDWFLVRHH  540
TKLEGNGRKV YWAPREGIVC CSCHHFEFSG ILCRHALRVL STGNCFQIPE RYLPTRWRRV  600
SFHHGSRHHL QLQDHNGDHH HRDRVQMLQT MVSSLVSESA KSKERLDLAT EHVSALLSQI  660
RDCPLSLTGF R

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087634.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	S8CS58	0.0	S8CS58_9LAMI; Uncharacterized protein
STRING	EMJ26358	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]