PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67309.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 68aa    MW: 8198.36 Da    PI: 11.1387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67309.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-052547123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C +C + F ++  L  H++ H
  EPS67309.1 25 YECRYCFREFANSQALGGHQNAH 47
                99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-62352No hitNo description
Gene3DG3DSA:3.30.160.603.1E-42351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4892552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
DKGLRLFGFN VIQERNQSAL HFRKYECRYC FREFANSQAL GGHQNAHKKE RKRLKLHRHP  60
KRNAFVES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, ZFP5 and the trichome initiation regulators GL1 and GL3 (PubMed:23506479). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:23506479, ECO:0000269|PubMed:24808098}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin and gibberellin. {ECO:0000269|PubMed:23506479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238916.17e-18zinc finger protein GIS3
SwissprotQ392652e-15ZFP6_ARATH; Zinc finger protein 6
TrEMBLS8CJJ85e-42S8CJJ8_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc05g009170.1.13e-17(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29941419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.12e-10zinc finger protein 5
Publications ? help Back to Top
  1. Giavalisco P, et al.
    High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome.
    Plant Mol. Biol., 2005. 57(4): p. 577-91
    [PMID:15821981]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]
  5. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]