PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67201.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 750aa MW: 86073.4 Da PI: 7.5215

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67201.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.1	4.4e-21	56	130	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v++ ++gkw+++++++eHnHe+ EPS67201.1 56 EFYNVYATQVGFKIRIGQLYRSRVDGSVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQRVETGKWVLANIKKEHNHEF 130 6*************************************987..............589*************************98 PP
2	FAR1	27.6	9.5e-09	228	259	58	89
FAR1 58 trtgCkaklkvkkekdgkwevtkleleHnHel 89 +r gC a ++++++++g+w+v++le+eHnH++ EPS67201.1 228 SRNGCGAYMRIQRHESGRWVVDRLEKEHNHDF 259 799***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-17	56	130	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.4E-6	228	259	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-27	358	450	IPR018289	MULE transposase domain
Pfam	PF04434	3.5E-8	635	669	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.534	636	672	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-9	647	674	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
ADHDVNRKKV RSFMNVRTQA SVAGISKVIG YKDDEGESRM EPHVGLEFDT AEEAQEFYNV 60 YATQVGFKIR IGQLYRSRVD GSVISRRFVC SKEGFQTNSR TGCPAFIRVQ RVETGKWVLA 120 NIKKEHNHEF EGSGEICPPR TQKKSFGTLK SSAGGASRTG IRSREDDNSA GVVDIKRFKK 180 EDTDGVPMAV GEPYKGLEFT SADEAYKFYY AYAAGMGFRI RIGHQHPSRN GCGAYMRIQR 240 HESGRWVVDR LEKEHNHDFE APLDPTVSIS SRAFKEEGSA VLENLDLVET NGGLSLVKRV 300 RESSIGDDWY TMLLDYFQSR QAEDMGFFYA VEVRDGKGMN VFWADSRSRF SCSQFGDVIV 360 LDTAYRRGSY TVPFASFLGV NHHRQPVLLG CALIADETEE SFTWIFQAWS RAMSGCRPVS 420 IIADQDVAIQ NSIAQVFPRT HHRFSAWQFF AKEQENLGLL LSMNPEFKYE YEACIFQSQT 480 SSEFDSAWNM LMSKYNLRES AWFKEMYRMR KSWVPLHIKG TFFAGIPVDG SLKSFSGNTL 540 TPQTPLDEFI IRFEKAVEQH REDERKEDFN SFNLQAVLHT KDPIEEQCRR LYTMEMFKIF 600 QKELLECYSY VGIKINVEGT ISRYLVQKCG NGDERNTVAF NTSNLNVSCS CKMFEFEGIL 660 CRHALKVFQI MNIRELPSRY ILHRWSKNAK YGILRDMESA GGLQDIKALM LWSLREEARS 720 YIEAGAASLE RYKLAFEIMQ EGRRNLCWQN

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

ADHDVNRKKV RSFMNVRTQA SVAGISKVIG YKDDEGESRM EPHVGLEFDT AEEAQEFYNV  60
YATQVGFKIR IGQLYRSRVD GSVISRRFVC SKEGFQTNSR TGCPAFIRVQ RVETGKWVLA  120
NIKKEHNHEF EGSGEICPPR TQKKSFGTLK SSAGGASRTG IRSREDDNSA GVVDIKRFKK  180
EDTDGVPMAV GEPYKGLEFT SADEAYKFYY AYAAGMGFRI RIGHQHPSRN GCGAYMRIQR  240
HESGRWVVDR LEKEHNHDFE APLDPTVSIS SRAFKEEGSA VLENLDLVET NGGLSLVKRV  300
RESSIGDDWY TMLLDYFQSR QAEDMGFFYA VEVRDGKGMN VFWADSRSRF SCSQFGDVIV  360
LDTAYRRGSY TVPFASFLGV NHHRQPVLLG CALIADETEE SFTWIFQAWS RAMSGCRPVS  420
IIADQDVAIQ NSIAQVFPRT HHRFSAWQFF AKEQENLGLL LSMNPEFKYE YEACIFQSQT  480
SSEFDSAWNM LMSKYNLRES AWFKEMYRMR KSWVPLHIKG TFFAGIPVDG SLKSFSGNTL  540
TPQTPLDEFI IRFEKAVEQH REDERKEDFN SFNLQAVLHT KDPIEEQCRR LYTMEMFKIF  600
QKELLECYSY VGIKINVEGT ISRYLVQKCG NGDERNTVAF NTSNLNVSCS CKMFEFEGIL  660
CRHALKVFQI MNIRELPSRY ILHRWSKNAK YGILRDMESA GGLQDIKALM LWSLREEARS  720
YIEAGAASLE RYKLAFEIMQ EGRRNLCWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090829.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	S8CQQ3	0.0	S8CQQ3_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]