PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65995.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 350aa    MW: 40731.2 Da    PI: 8.6271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65995.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.3e-076485223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                +C+ Cg+sF+ + +Lk+H+ +H
  EPS65995.1 64 TCESCGMSFRKPAHLKQHMLSH 85
                6*******************99 PP
2zf-C2H219.92e-06128152123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 + Cp  dC+ sF+r+++LkrH   H
  EPS65995.1 128 FICPlkDCNSSFRRNDHLKRHVLQH 152
                 78*******************9877 PP
3zf-C2H216.81.9e-05157182123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 ++Cp   C+ +F+++ n++rH++  H
  EPS65995.1 157 FECPteGCKSRFTTQGNMTRHLKEfH 182
                 89*********************988 PP
4zf-C2H218.74.7e-06197221123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 +kC+   Cgk+F+ +s L++H ++H
  EPS65995.1 197 HKCGeeGCGKVFKYSSRLRKHENSH 221
                 799999****************999 PP
5zf-C2H219.33.2e-06291314323
                 ET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                 C+   C+ +Fs+ksnL++Hi+  H
  EPS65995.1 291 CSfpECSLTFSTKSNLNQHIKAvH 314
                 77779***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.24E-61785No hitNo description
SMARTSM00355241942IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-56086IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3676390IPR007087Zinc finger, C2H2
SMARTSM003550.0316385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-10125154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.88E-7125154No hitNo description
SMARTSM003550.0021128152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679128157IPR007087Zinc finger, C2H2
PROSITE patternPS000280130152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-7155182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.31E-6155183No hitNo description
SMARTSM003550.0038157182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889157187IPR007087Zinc finger, C2H2
PROSITE patternPS000280159182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-7189221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.22E-5196223No hitNo description
SMARTSM003550.0093197221IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554197221IPR007087Zinc finger, C2H2
PROSITE patternPS000280199221IPR007087Zinc finger, C2H2
SMARTSM003550.43229254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231254IPR007087Zinc finger, C2H2
SMARTSM0035512257278IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6268311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.14E-9268326No hitNo description
PROSITE profilePS5015711.115289319IPR007087Zinc finger, C2H2
SMARTSM003550.0079289314IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291314IPR007087Zinc finger, C2H2
SMARTSM003556.2320346IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663320350IPR007087Zinc finger, C2H2
PROSITE patternPS000280322346IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGNEGEGRRE AIFKDIRRYY CDYCGISRSK KALITAHVLA QHPEEVKKQQ DCSEGEDCFE  60
KSNTCESCGM SFRKPAHLKQ HMLSHSLMNS KMREAPFLEL DQYQAGDCLG SSIKFSLTTL  120
DKRFERPFIC PLKDCNSSFR RNDHLKRHVL QHEGKTFECP TEGCKSRFTT QGNMTRHLKE  180
FHGEGLPRDE TRKTTEHKCG EEGCGKVFKY SSRLRKHENS HVKLHCVEAM CTEPDCMKYF  240
SNEKCLQAHI QSSHRYITCE KCGSRQLKQN IKRHMRSHES SDPSSPRRIE CSFPECSLTF  300
STKSNLNQHI KAVHLETRRF KCSVPDCDMR FAFKHVRDKH EKSELHTYTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A5e-131093504190Aart
2i13_B5e-131093504190Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.11e-132transcription factor IIIA
SwissprotQ84MZ47e-97TF3A_ARATH; Transcription factor IIIA
TrEMBLS8CGP30.0S8CGP3_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_08s0040g00240.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.23e-99transcription factor IIIA
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]