PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65924.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bZIP

Protein Properties

Length: 246aa MW: 26968 Da PI: 6.6609

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65924.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.6	6.1e-09	100	156	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee...lkkevak 58 k +r NReA r++R++Kka+ + Le++v +L a N++L k++++ l+ eva+ EPS65924.1 100 KSKKRPLGNREAVRKYREKKKARAASLEDEVIKLRAINQQLMKRVQSqslLEAEVAR 156 77899999***********************************99752225555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-14	94	164	No hit	No description
SMART	SM00338	8.5E-8	94	163	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	4.7E-13	97	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.002	98	145	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.81E-7	101	146	No hit	No description
CDD	cd14686	2.73E-11	102	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDNEDLDNQV LSYLDAHNAQ SSCSFDIDEY FLDRTQSCND AVGRTEAYTD VLGRTQACTH 60 AHACNPSGPD KSHTHTCIHV HTQIMASPSD DTAESIDKNK SKKRPLGNRE AVRKYREKKK 120 ARAASLEDEV IKLRAINQQL MKRVQSQSLL EAEVARLKCL LVDIRGRIEG EIGSFPYQQK 180 PVKDVAEVAA GGYVIGSAAG QGAASSYMVV NPCNVQSNCL GHGSENAPDG EACRFEKVHC 240 YGNHQS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551600.1	1e-114	basic leucine zipper 23 isoform X1
Refseq	XP_020551601.1	1e-114	basic leucine zipper 23 isoform X1
Swissprot	Q8GTS2	2e-63	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	S8CG81	0.0	S8CG81_9LAMI; Uncharacterized protein
STRING	Migut.B00082.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2989	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	3e-51	bZIP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]