PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS65370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | TCP | ||||||||
Protein Properties | Length: 245aa MW: 27210.9 Da PI: 8.3773 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.7 | 7.6e-29 | 51 | 123 | 3 | 75 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasecea 75 g kdrhsk++T +g+RdRRvRls+++a +++dLq++L + ++sk ++WLl +ak+ i el+ ++++++ +++ EPS65370.1 51 GSKDRHSKVCTVKGLRDRRVRLSIPTAVQIYDLQERLNLSQPSKVVDWLLDAAKKDINELPPLQQIPNFTTSS 123 78*************************************************************8888844422 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.2E-27 | 52 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.836 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MIPAREEEIK VKAPPSSSQK QKSSTTTTTI TSWSRSRIKD PRIVRVSKAL GSKDRHSKVC 60 TVKGLRDRRV RLSIPTAVQI YDLQERLNLS QPSKVVDWLL DAAKKDINEL PPLQQIPNFT 120 TSSIEAMLGS GKLRNEAVLE KWPHVFCGNP VSDQVEMSGI CNPYNPFLKW DSSNSCHHKG 180 HPSQNLGSSL EDYWHGFGVV QLQPSLGYHP PCLAQQVFGF DDAAAAAMPI LFMGEEKCGG 240 GEERD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-16 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-16 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338357.1 | 8e-47 | PREDICTED: transcription factor TCP17 | ||||
TrEMBL | S8CEX4 | 0.0 | S8CEX4_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003453 | 3e-46 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 7e-40 | TCP domain protein 17 |
Publications ? help Back to Top | |||
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