PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS65346.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C3H | ||||||||
Protein Properties | Length: 155aa MW: 17780 Da PI: 7.9179 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3e-09 | 83 | 104 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C +aHg EPS65346.1 83 SACPDFRK-GACKRGDACEYAHG 104 67******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.92E-5 | 78 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-5 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.253 | 80 | 106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-7 | 83 | 104 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-6 | 83 | 106 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 22 | 114 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
HYEPALVALQ RFLPSNSDDV VVEEGEDFDV PVDAFSCDNF RMFEFKVKKC ALARSHDWTA 60 CPFAHPGEKA RRRDPRKYHY SGSACPDFRK GACKRGDACE YAHGVFECWL HPARYRTQPC 120 KDGTHCRRRV CFFAHTQEQL RVLPYSSSSS AVSPE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081722.1 | 5e-95 | zinc finger CCCH domain-containing protein 23 | ||||
Swissprot | O82199 | 8e-74 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | S8CKY7 | 1e-111 | S8CKY7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009784195.1 | 2e-86 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 8e-71 | C3H family protein |
Publications ? help Back to Top | |||
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