PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64556.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 608aa    MW: 66979 Da    PI: 5.9768
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64556.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.51.9e-07262282526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  EPS64556.1 262 PCPDFRK-GACRRGDMCEYAHG 282
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.207.2E-1812145IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-1713146IPR020683Ankyrin repeat-containing domain
PfamPF127963.1E-1146122IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0885484IPR002110Ankyrin repeat
PROSITE profilePS5029716.70654130IPR020683Ankyrin repeat-containing domain
CDDcd002046.73E-1556132No hitNo description
PROSITE profilePS5008812.42289124IPR002110Ankyrin repeat
SMARTSM002483.3E-489121IPR002110Ankyrin repeat
SMARTSM003564.0E-6257283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4260284IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-5262282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582262284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4290320IPR000571Zinc finger, CCCH-type
SMARTSM0035651292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MDAGSEDAFG SLLELAANNN LEGFKKCVEC DPSSVGEVGL WYGRQKGSNQ MVLQHMTPLM  60
VAATYGSTDV LKFILSFPEV DVNRSCGVDQ STALHYAASG GTINSVEIVK LLIEAGADPS  120
HSDANGRCPL DVIVVSPKLQ AMKHSLQSLL TFDGCSFVEG ELGNLSDALN LDSPPSSPSQ  180
AIGMPSPKGV NSNRERKEYP IDPYSPDIKN SVYSTDEFRM FVFKVRPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYHYSC VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD  300
GTSCNRRVCF FAHKQDELRP LYVPSGSVVS SPRSTSGTTN AMDFAAGMMS PSPNGMPSAA  360
WPVPQQNNVP TLQFPGGNFH SSRLRLSLNA RDMPPEDFYA DIDAERQHLL LNHSVRSKTM  420
SPSNLEDIFS TEGSSSPLYP DQAMAAAVFS PTHKSAVLNQ SQQQQQSTLS PIKTTFSPRN  480
IDQSLLQQVT TSGRMSPRHA DPISPISARM SLLAREEMQF RSLSSRDLRS NFASFEEDAS  540
SYWSNSSAVF GDDSGVLMKR SSSFELLDNG DEPDLTWVQS LVKESTQDNI VEETNAARIE  600
AAMAKLHI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075220.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLS8CIQ10.0S8CIQ1_9LAMI; Uncharacterized protein
STRINGcassava4.1_002452m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]