PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64490.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 513aa    MW: 58025.3 Da    PI: 6.2738
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64490.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-09460509147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r rW+  E+e l  +vk+   g+Wk+I +       gRt+ ++k++w+++
       EPS64490.1 460 RRRWSRLEEETLTAGVKEIRRGNWKAILEAHRdvfDGRTEVDLKDKWRNL 509
                      789***************************999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.252455513IPR017930Myb domain
SuperFamilySSF466896.4E-12457509IPR009057Homeodomain-like
SMARTSM007179.4E-4459512IPR001005SANT/Myb domain
PfamPF002491.6E-6460509IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-10460509IPR009057Homeodomain-like
CDDcd116603.74E-10467510No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDIDPDIRDW IVEYSLRKIK NARTLSSLLD SLPLSDNPTF KKLVVLKMLR SDVRRKSVSE  60
CSLEYFEQLA KIELDRGVET LSDAVKRAYC AVAVHCTLAV LKIGEGEHSD PVYRFFDAVR  120
RIWRGKIGCA EAMKGKCGLG SEELWAWKAE IEASLLDDNV RKRILKNAEA IDAAEAIEAY  180
LVEEEETMGP SFLELPALQI EDMQKTVGRS SCLNRPEKVI SHGAHNESDV FDHMSGKGKE  240
NSTSDHCMDQ VAEEEEDEKG NSNEIAAQKG EIADKPMENQ VENSSPESSR QTRRRRRRKV  300
HPRGAKLVNP DEKQAKPPSP GNDALPRSSE VEEVRKLLKS STSDLHALVE DPLPEALRIA  360
EEANNATTQN KKHRQPVEEE NDAGTKNAFV CDRNGVVRSS GDAPKTSMME RNHTAESFEW  420
DDSIDESPSA TRLSRRLPSP TLIKVPPLNP YVDHKKRRLR RRWSRLEEET LTAGVKEIRR  480
GNWKAILEAH RDVFDGRTEV DLKDKWRNLT GGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289297RQTRRRRRR
2292298RRRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8CC760.0S8CC76_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-07MYB_related family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]