PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63683.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C3H

Protein Properties

Length: 670aa MW: 71678.5 Da PI: 6.114

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63683.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	287	307	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg EPS63683.1 287 PCPDFRK-GACRRGDMCEYAHG 307 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.49E-16	39	153	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.29E-15	65	150	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.3E-17	65	154	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.6E-11	66	141	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.398	75	150	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.055	75	105	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	8.683	75	96	IPR002110	Ankyrin repeat
SMART	SM00248	6.0E-4	110	142	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.22	110	145	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	282	308	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-5	285	309	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-5	287	307	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	287	309	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	314	345	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	44	317	340	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MCSGSDKSKS NSGSDRTAMK DLDRRVSDEA ADPLELAANN DVQAFKRFVE SDASAADGAG 60 VWFVRNADSR LITQESRTPL MVAASYGSTD VVKFLVALPE VDLNRACGLD KWTPLHCAAS 120 GGSVRALDVV KILLSAGSNP SACDALGRRP ADTIVAPPKL PGARAALEDL LAVNASSDAS 180 AFSTSASSSS PDARSPCSLS DFPSVHKLVN GGGSSAAASE KKQYPVDPSF PDIRNSAYSG 240 DEFRMYSFKV KPCSRAYSHD WTECPFAHPG ENARRRDPRK YHYSCVPCPD FRKGACRRGD 300 MCEYAHGVFE SWLHPAQYRT RLCKDGTSCA RQVCFFAHTP EELRPLYVST GSGVPSPRSV 360 GSSSSYMDMA AALSLLPGSP TSNGGMTTAA WPQPNVPTLH LPGGGLQSSR LRSSLSARDM 420 APDDLHVLPG DYAMGFGRPK TSLAPSNLED LFCSEMTASP PRFSDGFSPS HKSTAGFNPF 480 HPQQHQQQSL LSPINTSTVF SPRSSAEHSL LLASLGVASP RMSPRSSEPS SPIMNPHHLA 540 ALAQRERQQM RSLSSRDLGS GFVGPSAAAA IGSSPTSSAW SNWGSRNGKH DWEEEEEEEA 600 GSEGGEEEEP DVSWVQSLVK ESSPPEMTDK NAAAVSTSGE RSNQIVDSNS IEHSVLGDWL 660 EKMQLDHLTA

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MCSGSDKSKS NSGSDRTAMK DLDRRVSDEA ADPLELAANN DVQAFKRFVE SDASAADGAG  60
VWFVRNADSR LITQESRTPL MVAASYGSTD VVKFLVALPE VDLNRACGLD KWTPLHCAAS  120
GGSVRALDVV KILLSAGSNP SACDALGRRP ADTIVAPPKL PGARAALEDL LAVNASSDAS  180
AFSTSASSSS PDARSPCSLS DFPSVHKLVN GGGSSAAASE KKQYPVDPSF PDIRNSAYSG  240
DEFRMYSFKV KPCSRAYSHD WTECPFAHPG ENARRRDPRK YHYSCVPCPD FRKGACRRGD  300
MCEYAHGVFE SWLHPAQYRT RLCKDGTSCA RQVCFFAHTP EELRPLYVST GSGVPSPRSV  360
GSSSSYMDMA AALSLLPGSP TSNGGMTTAA WPQPNVPTLH LPGGGLQSSR LRSSLSARDM  420
APDDLHVLPG DYAMGFGRPK TSLAPSNLED LFCSEMTASP PRFSDGFSPS HKSTAGFNPF  480
HPQQHQQQSL LSPINTSTVF SPRSSAEHSL LLASLGVASP RMSPRSSEPS SPIMNPHHLA  540
ALAQRERQQM RSLSSRDLGS GFVGPSAAAA IGSSPTSSAW SNWGSRNGKH DWEEEEEEEA  600
GSEGGEEEEP DVSWVQSLVK ESSPPEMTDK NAAAVSTSGE RSNQIVDSNS IEHSVLGDWL  660
EKMQLDHLTA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087691.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	S8DLD3	0.0	S8DLD3_9LAMI; Uncharacterized protein
STRING	Migut.B01294.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-170	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]