PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63307.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 738aa MW: 83971.6 Da PI: 7.2032

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63307.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.4	8.1e-12	37	112	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY+eYA+++GF r++ + s +g ++++f Cs++g+++ ++ C+a l+++++ +kw+vtk++++H H+++ EPS63307.1 37 FYEEYARNIGFIPRVNLK-PSISDGMSISQEFICSRNGSKKIAGEE-------------TCEAALRIELNGrINKWVVTKFVKDHAHSIV 112 9********9988865.5558999*********9998887.............9******999************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-8	37	112	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-25	232	323	IPR018289	MULE transposase domain
Pfam	PF04434	9.8E-10	496	539	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.251	506	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.3E-5	517	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence Send to blast
NGEANPSEHS LSQDEDGIFS EPQIGMEFDS EDAARMFYEE YARNIGFIPR VNLKPSISDG 60 MSISQEFICS RNGSKKIAGE ETCEAALRIE LNGRINKWVV TKFVKDHAHS IVRCSKRQRS 120 KHKRQFTTSA DYDGESSEFM DLVPSASMYA SLDGNFSASG LKNSAKTMGS SGYPRSTLGR 180 DAQNLLDYFK KMQAENPGFY YAIQLDEENR MANAFWADSR SRASYAHFGD AVILDTTYRV 240 NRCRVPFAPF TGVNHHGHSI LFGCALLFDD SQSTFIWLFK TFLAAMSDRA PVSFTTDRDR 300 AIVTAVAEVF PKSRHCINKW DLLREGQEVR LSNPNFQVDL YKCISMAETV EEFESSWNSV 360 VDKYGLRRND WLQSIYDARQ QWIPVYFRDS FFAAISSGTE LETSFFDGYV DNQTTLPMFF 420 KQYERALENS FDKEVDADFD TMCTAPVLRT PSPMEKQASS LYTKRIFAKF QEELVETFVY 480 TANRVDGDQH NFTYRVAKFE DDRKSYSVAV NVAEKRASCS CRMFEHCGIL CRHILTVFTV 540 VTNILTLPSH YILKRWTRSA KSIETSDEKD SEVPRSMTTR YNRLCREAIV FSEEASISSK 600 TYISGINVLR EGTKTVGGLK RRSSSASAVG VHHDARKTQA GLPETAPSLW PRPEEISPSF 660 NLDRVGAVPD TVLQNFLKES SFFDFFLRET KYYSTFAFSD LSSMKKVVLP HLKSMTWLME 720 NKNSNPAVKI AVINLKVR

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence Send to blast

NGEANPSEHS LSQDEDGIFS EPQIGMEFDS EDAARMFYEE YARNIGFIPR VNLKPSISDG  60
MSISQEFICS RNGSKKIAGE ETCEAALRIE LNGRINKWVV TKFVKDHAHS IVRCSKRQRS  120
KHKRQFTTSA DYDGESSEFM DLVPSASMYA SLDGNFSASG LKNSAKTMGS SGYPRSTLGR  180
DAQNLLDYFK KMQAENPGFY YAIQLDEENR MANAFWADSR SRASYAHFGD AVILDTTYRV  240
NRCRVPFAPF TGVNHHGHSI LFGCALLFDD SQSTFIWLFK TFLAAMSDRA PVSFTTDRDR  300
AIVTAVAEVF PKSRHCINKW DLLREGQEVR LSNPNFQVDL YKCISMAETV EEFESSWNSV  360
VDKYGLRRND WLQSIYDARQ QWIPVYFRDS FFAAISSGTE LETSFFDGYV DNQTTLPMFF  420
KQYERALENS FDKEVDADFD TMCTAPVLRT PSPMEKQASS LYTKRIFAKF QEELVETFVY  480
TANRVDGDQH NFTYRVAKFE DDRKSYSVAV NVAEKRASCS CRMFEHCGIL CRHILTVFTV  540
VTNILTLPSH YILKRWTRSA KSIETSDEKD SEVPRSMTTR YNRLCREAIV FSEEASISSK  600
TYISGINVLR EGTKTVGGLK RRSSSASAVG VHHDARKTQA GLPETAPSLW PRPEEISPSF  660
NLDRVGAVPD TVLQNFLKES SFFDFFLRET KYYSTFAFSD LSSMKKVVLP HLKSMTWLME  720
NKNSNPAVKI AVINLKVR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090244.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_011090246.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_011090247.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_020552429.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	S8DU01	0.0	S8DU01_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N02416.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]