PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63160.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GATA
Protein Properties Length: 312aa    MW: 33955.8 Da    PI: 6.365
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63160.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18245278134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C++C++ kTp+WR gp g+ktLCnaCG+++++ +
  EPS63160.1 245 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 278
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.1E-766312IPR016679Transcription factor, GATA, plant
SMARTSM004017.9E-14239289IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.952239275IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14242276IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.33E-14242302No hitNo description
CDDcd002026.73E-14244292No hitNo description
PfamPF003202.5E-16245278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
GVMECIEARA LKASFLSQMA MKATSQAFYN DDGWCLTGVP SEDFPVEDLL NLDFSDKEFQ  60
DAAAGLFKED QDSSNKGGSN NSSSTFSGAD DFDSLSSGNL HVPVEEDLDN LEWLSQFADD  120
STAAGASLFP IGNFPSRASV KSEAAVDERA FIIPPPVPRK SRSKRERSNG QSWSLTSPQL  180
SSVDSSTASS SSYTSTPPLP ILLFLNAAPA AAQEPDWFST VEKPPAKKPK RKPEPESGGL  240
SGRRCTHCQV QKTPQWRTGP LGPKTLCNAC GVRFKSGRLF PEYRPACSPT FSHDVHSNSH  300
RKVLEMRRKK EA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158165RKSRSKRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088480.21e-129GATA transcription factor 5-like
RefseqXP_020551667.11e-129GATA transcription factor 5-like
TrEMBLS8C8L20.0S8C8L2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.B00182.1.p1e-111(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.14e-41GATA transcription factor 7
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]