PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62621.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HSF
Protein Properties Length: 284aa    MW: 31597.2 Da    PI: 4.9519
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62621.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.7e-36141042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+e+g++f+v++++efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF+kg+k+ll++i+
    EPS62621.1  14 FLSKTYQLVDDRTVDDVISWNEDGSTFIVWNPTEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNESFRKGEKKLLCDIQ 101
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    EPS62621.1 102 RRK 104
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-37698IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5610103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.39E-3411103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
GGESDTARSM PTPFLSKTYQ LVDDRTVDDV ISWNEDGSTF IVWNPTEFAR DLLPKFFKHN  60
NFSSFVRQLN TYGFRKVVPD RWEFSNESFR KGEKKLLCDI QRRKILTPTA AATSTPTAAV  120
PLQSTPAVPL RTVSPSDSGE EQVISSSNSP AAVREFSGRT SELIRENERL RTENVQLNRE  180
LGQMKSLCNN IYILMSTFGS GHDSNGKNDR SYNLLSPETA VKPLDLLPMT NFCQEIETAM  240
VSAASNGDNV RSSAEEMSAR LFGVPISMKR GRDIDCSSSG DDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-221410329129Heat shock factor protein 1
5d5v_B1e-221410329129Heat shock factor protein 1
5d5v_D1e-221410329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.11e-147heat stress transcription factor B-2a
RefseqXP_011076202.11e-147heat stress transcription factor B-2a
SwissprotQ9SCW48e-86HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLS8CDQ30.0S8CDQ3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.F00357.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-86heat shock transcription factor B2A
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]