PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62607.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 175aa    MW: 19657.2 Da    PI: 10.1542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62607.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1990140255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+++AeIrdp  ng   r++lg++ taeeAa a+++a+ k++g
  EPS62607.1  90 HFRGVRQRP-WGKFAAEIRDPARNG--SRVWLGTYETAEEAALAYDRAAYKIRG 140
                 69*******.**********97676..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-3289149IPR001471AP2/ERF domain
PfamPF008471.0E-1390140IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2390150IPR016177DNA-binding domain
CDDcd000184.66E-2990149No hitNo description
SMARTSM003802.5E-3690154IPR001471AP2/ERF domain
PROSITE profilePS5103223.97390148IPR001471AP2/ERF domain
PRINTSPR003679.3E-1191102IPR001471AP2/ERF domain
PRINTSPR003679.3E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
PLNRWSSGDG RLMPYLTETW GELPLRVNDS EDMVIYGLLN DAVNNGWTPS VDVKSEPRSE  60
LEINFNDFIV PPQPVAPVAP VVVTRPKRRH FRGVRQRPWG KFAAEIRDPA RNGSRVWLGT  120
YETAEEAALA YDRAAYKIRG TKALLNFPHK IGLNEPEPVR ITAKRRSHAP SSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3387155270ATERF1
3gcc_A4e-3387155270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167KRRSH
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076437.21e-81LOW QUALITY PROTEIN: ethylene-responsive transcription factor 2-like
SwissprotQ404792e-78ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLS8DS191e-124S8DS19_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009606945.11e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-43ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]