PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS62519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 372aa MW: 42201.2 Da PI: 10.0422 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++I+++mg ++R +k+c +rw +yl EPS62519.1 4 RQRWQPEEDSLLRAYVKQYGPKEWNLISQRMGrvLNRDPKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 33.4 | 1e-10 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + EPS62519.1 59 KGSLTVEEQNLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 57789*****************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.602 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.16E-22 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.16E-10 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.6E-14 | 7 | 67 | No hit | No description |
SMART | SM00717 | 1.4E-9 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.924 | 58 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-15 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.82E-6 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010338 | Biological Process | leaf formation | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0000793 | Cellular Component | condensed chromosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 372 aa Download sequence Send to blast |
MKDRQRWQPE EDSLLRAYVK QYGPKEWNLI SQRMGRVLNR DPKSCLERWK NYLKPGIKKG 60 SLTVEEQNLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKSRRTLPD 120 SGESTTENAA SQGKYDHILE TFAEKYVQPK LLAGFHPQAQ AQSGIVIPAV NLPPMVAEAS 180 PLVLSLASAP ATAAVDPAIL PPWMKVNCST TSTSSLASSS SPTAAASPSV SLTLSPSEPA 240 VFDPEIPPVP RSFHFQHVAA LIQDLDEGKE NWIRHKKEAT WRLSRLEQQL ESEKARRRRE 300 KTEEIEAEIR RLRDEEAAYS ARLEAECREQ LTAVRRDADD TEAKLMETWR SKHVKMVKLL 360 KQIGPHFNFH GP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-15 | 7 | 92 | 7 | 89 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-14 | 7 | 92 | 30 | 112 | MYB TRANSFORMING PROTEIN |
1mse_C | 9e-15 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
1msf_C | 9e-15 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 295 | 300 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097206.1 | 1e-153 | protein rough sheath 2 homolog | ||||
TrEMBL | S8C6X3 | 0.0 | S8C6X3_9LAMI; Uncharacterized protein | ||||
STRING | VIT_14s0083g00120.t01 | 1e-142 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2933 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37630.1 | 1e-63 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|