PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS62345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 151aa MW: 17880.7 Da PI: 6.1057 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 150 | 1.5e-46 | 4 | 151 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssa......sec...eaesssssasns 85 agkkdrhski+T++g RdRR+Rls++ a++fFdLqd+LG+dk+sktieWL+qq+k+ai el ++ + a sec + +++ n+ EPS62345.1 4 AGKKDRHSKICTAQGIRDRRMRLSLQAARKFFDLQDMLGYDKASKTIEWLFQQSKKAIEELSESsnfsnsD---ArsesfvSECevvS---GIEESCNK 96 89**************************************************************7665331...14444554443331...11111122 PP TCP 86 ssg........kaaksaakskksqksaasalnlakesrakarararertrekmri 132 + + +++++++ ++k++ ++ ++ +esr+kararar rtrekm++ EPS62345.1 97 NDNtneeveeeEEEPEEEDEEKKNPRNDVVRRNTRESREKARARARWRTREKMMN 151 22233456665444444433333333334588888******************75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-47 | 5 | 150 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.712 | 6 | 64 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.075 | 131 | 148 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
RRRAGKKDRH SKICTAQGIR DRRMRLSLQA ARKFFDLQDM LGYDKASKTI EWLFQQSKKA 60 IEELSESSNF SNSDARSESF VSECEVVSGI EESCNKNDNT NEEVEEEEEE PEEEDEEKKN 120 PRNDVVRRNT RESREKARAR ARWRTREKMM N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-16 | 11 | 65 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-16 | 11 | 65 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071262.2 | 9e-52 | transcription factor TCP12 | ||||
TrEMBL | S8C6E9 | 1e-104 | S8C6E9_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009757682.1 | 1e-42 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2436 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 6e-30 | TCP domain protein 12 |
Publications ? help Back to Top | |||
---|---|---|---|
|