PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62319.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family B3
Protein Properties Length: 486aa    MW: 55575.9 Da    PI: 6.0342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62319.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-17137227199
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k l++s+v++  ++ lp +f++ h      ++ +++le+e+g+++ +k+i  k++    l++GW++F+  n+L egD+++F+l+g  +  l+v ++r
  EPS62319.1 137 FLKPLVRSHVGSCFWMGLPVPFCRIHlP---GKDAEMILENENGEEFPIKYIAHKTG----LSAGWRKFAAGNKLLEGDVLIFQLIGPCR--LKVYIIR 226
                 89*********************88852...35678***************655555....*************************9444..5888888 PP

                 S CS
          B3  99 k 99 
                 +
  EPS62319.1 227 A 227
                 6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-19129228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22130228IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-24135226No hitNo description
PROSITE profilePS5086312.576137228IPR003340B3 DNA binding domain
PfamPF023621.7E-15137227IPR003340B3 DNA binding domain
SMARTSM010198.8E-22137228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MKLKIVHQNQ ETRPGEDHGI REFEPEMKKT EEEQILFSSG DDHVEQQIFE PLEPTPVSNP  60
DSVLLSGKRK RKPKWVIDEF VPAFRRKKKK KKSSSSNRKH GARDAAGLWT SSSRFKSPTV  120
MRAEEVQSSL GDDQPSFLKP LVRSHVGSCF WMGLPVPFCR IHLPGKDAEM ILENENGEEF  180
PIKYIAHKTG LSAGWRKFAA GNKLLEGDVL IFQLIGPCRL KVYIIRANDL PEVDGALSLL  240
NLESRIKRND PDATLDSCNE KKRHVSKQSP LLDVLTLEQQ PENDSDEVAS EVLESTKTSE  300
TCYSFEDVKS FEGFHIMVNG VCIDSDIPEQ TRRNYYDLCC TRNQFLHDHL LPGLYRKLAS  360
SMIVETLNIA DSIRACKLVD TPREDFEVWE KSLRSFELLG LDVGFLRARL QELSSLAFES  420
EGASNVREYR EARDGKLRAE DEIRKLESRL GELKEARERY DGLSERRKAE AERFESTFRE  480
AVDAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16887RKRKPKWVIDEFVPAFRRKK
26991KRKPKWVIDEFVPAFRRKKKKKK
38490RRKKKKK
48591RKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099150.10.0B3 domain-containing protein Os01g0234100
TrEMBLS8C6C80.0S8C6C8_9LAMI; Uncharacterized protein
STRINGMigut.H00442.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-35B3 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]