PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61944.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 572aa    MW: 62814 Da    PI: 5.7348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61944.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.15.8e-992165723374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++L+ec +  ++ +  +a + L+ ++  aspdgdp +R+ +yf eA+ +r+++         p +++s + +++ +  +k++++++P+ kf hltaNqa
  EPS61944.1 216 KALIECLRLCDA-QPDAAAKSLSAIRSAASPDGDPSERVSFYFSEAIFNRISK--------QPQRPASVDGEEDFILPYKALNDACPYSKFIHLTANQA 305
                 789999998877.66788889********************************........4555555556999************************* PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ilea+++++++Hi+Df+i  G+QWpa+lqa+a+Rp+g+p s+RiTg+ +++ g   +++l++tg+rL++fAe+l+++fef+ +   +l+  ++++Lr++
  EPS61944.1 306 ILEATHRAHKIHILDFGIVRGIQWPAFLQAIATRPAGKPhSVRITGIPAASLGrsPETALSATGNRLREFAEALDLNFEFESI--PELQ-HTTNNLRIS 401
                 ***********************************665549********98889999*************************7..4444.4589***** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 p+E+laVn++lqlh+lld      + ++++L+lv+sl+P +v++ e e+++  +    +r+ +al++y+a+f+sle  ++res er++vEr++lgr+i 
  EPS61944.1 402 PDESLAVNFMLQLHTLLD------DGITNTLNLVRSLNPCIVTLGEYEVNLrHGLGHRARMENALRHYAAVFESLEPAMARESPERAMVERVVLGRRIA 494
                 ****************93......334558*********************8889******************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                  +v   g++     + +e+Wr+ +e+aGF+++ ls++a++qak ll +++ s+ yr+ ++   g l l W d p+++vS+Wr
  EPS61944.1 495 GIVGGGGDN----LQDKERWRSYMEKAGFETMGLSHYAVSQAKILLWNYSySECYRLVHSspPGFLSLAWDDVPILTVSSWR 572
                 ********9....888889*******************************9999***9772245666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000678.8E-10138IPR001128Cytochrome P450
SuperFamilySSF482645.89E-14160IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.103.5E-13161IPR001128Cytochrome P450
PROSITE patternPS000860312IPR017972Cytochrome P450, conserved site
PROSITE profilePS5098550.987188549IPR005202Transcription factor GRAS
PfamPF035142.0E-96216572IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0004497Molecular Functionmonooxygenase activity
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MPFGGGPRLC AGAELAKLEM AIFIHHLVLN FRWKLAGPDM PLAYPFVDFP KGLPISVRRR  60
DPEGGKMAYL CTDTGNLMAI AQQLIQQKKQ QQEKQKKKQQ EEEHELIHGA WSSSSSSAVY  120
APQFAASAGD GDAVFGFQGF PDLCGGGGGG GGGEFDSDEW VESLIGGGDS NADGRWEDES  180
AEFSLYEPDS FRVDPSPVSD LSRVILSSSP SKPILKALIE CLRLCDAQPD AAAKSLSAIR  240
SAASPDGDPS ERVSFYFSEA IFNRISKQPQ RPASVDGEED FILPYKALND ACPYSKFIHL  300
TANQAILEAT HRAHKIHILD FGIVRGIQWP AFLQAIATRP AGKPHSVRIT GIPAASLGRS  360
PETALSATGN RLREFAEALD LNFEFESIPE LQHTTNNLRI SPDESLAVNF MLQLHTLLDD  420
GITNTLNLVR SLNPCIVTLG EYEVNLRHGL GHRARMENAL RHYAAVFESL EPAMARESPE  480
RAMVERVVLG RRIAGIVGGG GDNLQDKERW RSYMEKAGFE TMGLSHYAVS QAKILLWNYS  540
YSECYRLVHS SPPGFLSLAW DDVPILTVSS WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1152115721375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099604.11e-175scarecrow-like protein 4
RefseqXP_020554688.11e-175scarecrow-like protein 4
SwissprotQ9FL031e-157SCL4_ARATH; Scarecrow-like protein 4
TrEMBLS8C5E50.0S8C5E5_9LAMI; Uncharacterized protein
STRINGGorai.003G015400.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-143GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]