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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | EPS61777.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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| Family | ARF | ||||||||
| Protein Properties | Length: 632aa MW: 69970.1 Da PI: 5.4779 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 58.9 | 8.9e-19 | 6 | 72 | 30 | 99 |
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F ++++ +l+++v+r+
EPS61777.1 6 PPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFV--RDEKSQLLLGVRRA 72
444.59************************************************..45677789999997 PP
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| 2 | Auxin_resp | 119.4 | 2.9e-39 | 97 | 180 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++++F+v+YnPra++seFvv+++k++ka+ +++svGmRf m+fete+ss+rr++Gt++g+sd+dp+rWpnSkWrsL+
EPS61777.1 97 AAHAAANRTPFTVFYNPRACSSEFVVSFAKYRKAVFgTQISVGMRFGMMFETEESSKRRYMGTITGISDVDPLRWPNSKWRSLQ 180
79********************************988*********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.44E-24 | 1 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.28E-14 | 1 | 71 | No hit | No description |
| PROSITE profile | PS50863 | 12.746 | 1 | 73 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 0.0012 | 2 | 73 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 7.1E-26 | 3 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 9.7E-16 | 5 | 72 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.2E-34 | 97 | 180 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 1.1E-8 | 531 | 620 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 26.238 | 534 | 617 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 1.28E-9 | 553 | 612 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 632 aa Download sequence Send to blast |
DYSLQPPTQE LVVRDLHDNT WTFRHIYRGQ PKRHLLTTGW SMFVGAKRLR AGDSVLFVRD 60 EKSQLLLGVR RANRQQATMP SSVLSADSMH IGILAAAAHA AANRTPFTVF YNPRACSSEF 120 VVSFAKYRKA VFGTQISVGM RFGMMFETEE SSKRRYMGTI TGISDVDPLR WPNSKWRSLQ 180 VDWDEAGCGD KRNRVSPWEI ESPENLFVFP SLSSTVKRPF RTAFPGAQPE WGALLNNSSS 240 SRPSDLPGPT ISSGPWSEQL LKFVMRPQSN CMFVTPNGIV MQEPIEAQMN SQCAASDVGV 300 SERNNSSMLP LQAGGWIQAT KIESSSTPNP VLLQYPGPVD FASYPPPLCS NSTGSFRNVG 360 SPCPSRKLDH HHHSESSENG YIPPLPQEGH HQLWDSQPDM PNFQYSSSVL KDLMSENTNQ 420 GDIYSCLNLD GSNNSGSSTV IDPSVSSLVA LDDICAKNGD FQSPCGYFLG NISSNQDVQS 480 QMTSASLADS QNNFSVAEYA DNSGGASSSN VDFEENNILQ HQPSWHHQVA PRFRTYTKIQ 540 KAGSVGRSID VSGFKNYDDL RSEIERMFGL EGFLNDLSSG WKLVYVDFEN DVLLVGDDPW 600 EEFVGCVKCI RILSPSEVKQ MGEEGMQLLN SV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 1e-117 | 1 | 203 | 188 | 390 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012835742.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
| Swissprot | P93024 | 1e-129 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | S8DPQ2 | 0.0 | S8DPQ2_9LAMI; Auxin response factor (Fragment) | ||||
| STRING | Migut.C00816.1.p | 0.0 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5859 | 23 | 34 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 1e-130 | ARF family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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