PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61775.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ZF-HD
Protein Properties Length: 276aa    MW: 30588.1 Da    PI: 7.0322
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61775.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.4e-3280137260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++v+Y+eClkNhAas+Gg+a+DGCgEfmps ge+gt++al+C+ACgCHRnFHR+eve e
   EPS61775.1  80 KAVKYRECLKNHAASMGGNATDGCGEFMPS-GEDGTMEALTCSACGCHRNFHRKEVEGE 137
                  679**************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.6E-3082134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2582137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.3E-3183134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.64784133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.4E-29209275IPR009057Homeodomain-like
SuperFamilySSF466896.72E-18212274IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-26213269IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
PIPLNTCYGV GVGVGGGQQH GHSHMMLHHH HHHQNTQNAP PPVTATTSAT AIDDEDDDDD  60
EDDHFHHHHH HQSQSFPLKK AVKYRECLKN HAASMGGNAT DGCGEFMPSG EDGTMEALTC  120
SACGCHRNFH RKEVEGENPS CETLGFHPPP PPHPHPHHHH HHGGGALIPP PPHHQMIMPY  180
SIGSIPSESD DQEEGGGGGG SGMIIATQTQ LVKKRFRTKF TQEQKEKMLI FAEKVGWKIQ  240
KQEESVVQQF CQEVGVKRRV LKVWMHNNKH TLAKKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242142711875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617744.15e-96zinc-finger homeodomain protein 4-like
SwissprotO647223e-76ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLS8C4G20.0S8C4G2_9LAMI; Uncharacterized protein (Fragment)
STRINGcassava4.1_013112m2e-95(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-40zinc finger homeodomain 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]