PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS61311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | YABBY | ||||||||
Protein Properties | Length: 121aa MW: 13530.7 Da PI: 9.4866 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 100.9 | 2.8e-31 | 2 | 121 | 2 | 134 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +v s++v yv+CnfCntil+v vP + l+++ tvrC C++llsvnl+ + + ++ ++++ +++ ++ s+s+ ++ EPS61311.1 2 SVEMVSDRVSYVHCNFCNTILVVGVPCSNLLTIATVRCERCSNLLSVNLSGSLPQSLHRQD--------FQKQKS--LAAIDLPFKEIGSSSKCKRLCP 90 67889*******************************************9987533322222........222222..2334444444444555555555 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfik 134 +s++++ ++++ p irPPekrqrvPsaynrfik EPS61311.1 91 MSNDDQ--ATKTSP-IRPPEKRQRVPSAYNRFIK 121 555444..445556.9*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.3E-36 | 6 | 121 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MSVEMVSDRV SYVHCNFCNT ILVVGVPCSN LLTIATVRCE RCSNLLSVNL SGSLPQSLHR 60 QDFQKQKSLA AIDLPFKEIG SSSKCKRLCP MSNDDQATKT SPIRPPEKRQ RVPSAYNRFI 120 K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552308.1 | 6e-49 | putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 2e-32 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | S8CAB8 | 1e-83 | S8CAB8_9LAMI; Uncharacterized protein | ||||
STRING | Gorai.001G127000.1 | 9e-41 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 8e-28 | YABBY family protein |
Publications ? help Back to Top | |||
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