PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS61270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | WOX | ||||||||
Protein Properties | Length: 176aa MW: 20625.1 Da PI: 7.5067 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.2e-20 | 3 | 62 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Lee ++ r+ps e+++ + +kl +++ ++V++WFqN++a+ek+ EPS61270.1 3 TRWSPTPEQLQTLEEIYRHgVRTPSPEQIQSIVSKLrrfgRIEGKNVFYWFQNHKAREKQ 62 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 109.5 | 1.9e-35 | 2 | 64 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRW+PtpeQ++ Lee+y++G+rtP+ e+iq i ++L+++G+ie+kNVfyWFQN+kaRe+q++ EPS61270.1 2 NTRWSPTPEQLQTLEEIYRHGVRTPSPEQIQSIVSKLRRFGRIEGKNVFYWFQNHKAREKQRK 64 69***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.386 | 1 | 63 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-4 | 1 | 67 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.55E-5 | 3 | 64 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-12 | 3 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-17 | 3 | 62 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-9 | 3 | 62 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00616 | 0 | 12 | 26 | IPR033379 | Histidine acid phosphatase active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MNTRWSPTPE QLQTLEEIYR HGVRTPSPEQ IQSIVSKLRR FGRIEGKNVF YWFQNHKARE 60 KQRKRRRLEL QDFYALQQRK WCSGGIDQSS DFKNHYQAAA AQTPCCWPLE EFFTAQKGSE 120 TAARKTLDLF PIVPFRAAAG KEENHDDDDD DDGISEMAKP VPNQFFEFLP IPAREF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 66 | RKRRR |
2 | 63 | 67 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844100.1 | 1e-31 | PREDICTED: WUSCHEL-related homeobox 6-like | ||||
TrEMBL | S8C367 | 1e-129 | S8C367_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L00355.1.p | 5e-31 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4681 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 3e-27 | WOX family protein |
Publications ? help Back to Top | |||
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