PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60727.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 135aa    MW: 15268.1 Da    PI: 10.3112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60727.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.61.1e-2170120256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr+++ +g+W+AeIrdps+   + r++lg+f+taeeAa  +++a+ +l+g+
  EPS60727.1  70 KYRGVRQRP-WGKWAAEIRDPSK---KVRIWLGTFDTAEEAAMVYDNAAIRLRGP 120
                 8********.**********964...6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.8E-401131IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.103.7E-3269127IPR001471AP2/ERF domain
SMARTSM003803.5E-4170133IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2370127IPR016177DNA-binding domain
PROSITE profilePS5103224.06570127IPR001471AP2/ERF domain
CDDcd000181.70E-3170126No hitNo description
PfamPF008473.4E-1470119IPR001471AP2/ERF domain
PRINTSPR003677.7E-127182IPR001471AP2/ERF domain
PRINTSPR003677.7E-1293109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
RRVRFCFTDG DATDSSGDEN DCVLGFAAKR RRVKRFVNEV RILAADDLGR KESKSIKEGG  60
DRKNETASRK YRGVRQRPWG KWAAEIRDPS KKVRIWLGTF DTAEEAAMVY DNAAIRLRGP  120
DALTNFGKNP SDSDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2369126462ATERF1
3gcc_A5e-2369126462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12832KRRRV
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890968.14e-45ethylene-responsive transcription factor CRF1
SwissprotQ9SUE37e-42CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLS8DM992e-92S8DM99_9LAMI; Uncharacterized protein (Fragment)
STRINGevm.model.supercontig_122.272e-44(Carica papaya)
STRINGXP_010482718.11e-43(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-44cytokinin response factor 4
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]