PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS59324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | SRS | ||||||||
Protein Properties | Length: 191aa MW: 20996.2 Da PI: 8.0322 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 184.2 | 5.2e-57 | 16 | 156 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +++CqdCGnqakkdC+h RCRtCC+srgf+C+thvkstWvp+++rr r+ ++ ++++aa+ + s +++++ ++ +++ + l+ EPS59324.1 16 SSSRCQDCGNQAKKDCEHLRCRTCCRSRGFQCQTHVKSTWVPVSRRRPRHLVMHHHHQSNAAAVTV--SM-------DHTQNPKRY-RENHAPLLGLDG 104 6789********************************************955554443333222211..11.......222223333.35677888999* PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++P evs +avfrcvrvssvd++ +++aYqt+vsigGh f GiLydqG+e+ EPS59324.1 105 RDFPGEVSFPAVFRCVRVSSVDNAVDQYAYQTSVSIGGHNFTGILYDQGPEN 156 **************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.7E-58 | 17 | 155 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 7.2E-26 | 20 | 61 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 8.2E-24 | 107 | 154 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MMRNEEVEAL NSESSSSSRC QDCGNQAKKD CEHLRCRTCC RSRGFQCQTH VKSTWVPVSR 60 RRPRHLVMHH HHQSNAAAVT VSMDHTQNPK RYRENHAPLL GLDGRDFPGE VSFPAVFRCV 120 RVSSVDNAVD QYAYQTSVSI GGHNFTGILY DQGPENDGTT ANFLTSSSGS ALLQQPNFLS 180 GSSTAAAISP A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019261916.1 | 1e-70 | PREDICTED: protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9XGX0 | 5e-45 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | S8BY38 | 1e-141 | S8BY38_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009785993.1 | 2e-67 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 3e-47 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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