PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58935.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C3H

Protein Properties

Length: 328aa MW: 37185.6 Da PI: 7.4041

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58935.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	193	218	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ EPS58935.1 193 YQPDICKDYKETGYCGYGDSCKFMHD 218 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.96E-9	191	223	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	192	219	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	192	220	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.5E-10	193	218	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-12	193	223	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	8.5E-14	254	310	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF13920	2.4E-9	268	311	No hit	No description
SuperFamily	SSF57850	5.05E-13	268	311	No hit	No description
CDD	cd00162	6.58E-8	269	310	No hit	No description
SMART	SM00184	1.8E-4	269	306	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50089	10.601	269	307	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	284	293	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MPESEANAVD APDEPSSVCT FFRKPSKGKN IRKRSVTVQE GEDEDSKSES SVVITRKKPA 60 TVDNKLRFST GPLTTLKDPD PNKAKATVFE YESSKEIQVQ NDSRATATLE TETEFSKDAR 120 AVRERVLRQA EDALKGKSKS DKGEEKLYKG IHGYTDYKAG FRREQTVASE KAGGAHGPLR 180 ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLEK EWEEKEKERA 240 RKLFMGMKDE DEGGAEDEED EDSQLPFACL ICRESFVDPV VTRCKHYFCE HCALKHHAKN 300 KKCFVCNQPT NGIFNTAFEI RKKIAPKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	1e-64	18	324	14	317	RING finger protein 113A
5z58_M	1e-64	18	324	14	317	RING finger protein 113A
6ff4_t	1e-64	18	324	14	317	RING finger protein 113A
6ff7_t	1e-64	18	324	14	317	RING finger protein 113A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022898398.1	1e-178	zinc finger CCCH domain-containing protein 1
Refseq	XP_022898399.1	1e-178	zinc finger CCCH domain-containing protein 1
Swissprot	Q8GX84	1e-155	C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBL	S8BWH7	0.0	S8BWH7_9LAMI; Uncharacterized protein
STRING	XP_009609000.1	1e-176	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4403	23	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-136	C3H family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]