PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58580.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family B3
Protein Properties Length: 399aa    MW: 45060.9 Da    PI: 10.9038
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58580.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-1547123285
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                  k ++ +++ + +r+++p  f++e g+   +++ + l+d++gr W v+l+y+ ++    l++GWk+Fv+ ng+k g  v+F+++
  EPS58580.1  47 AK-TMDASSITYSRMYIPLGFLNEAGIR--SDMSIELRDRKGRLWPVTLSYNSRK----LSSGWKSFVDNNGVKIGNRVLFSFK 123
                 34.45788888999********999877..8899***************666665....9*********************975 PP
2B345.51.3e-14305378385
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                 k++ + ++ k +r+ lp kf++e g+   +s+ + ++d +grsW + l  + ks+  +   GW++Fv+ +g+++g +vvF+++
  EPS58580.1 305 KTM-TFSNIK-NRMFLPVKFLNEAGIR--GSMSIEVRDGKGRSWPMIL--NYKSRNLW---GWRSFVRNHGVQTGNTVVFSFE 378
                 555.334444.569*******999876..99*****************..77777754...9******************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-1743125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.05645141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-1645123IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-846139IPR003340B3 DNA binding domain
CDDcd100171.74E-1146126No hitNo description
PfamPF023623.8E-1346123IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-11146242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-9147241IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.04155245IPR003340B3 DNA binding domain
PROSITE profilePS5086310.461175240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-15301390IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.379301392IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-15301381IPR015300DNA-binding pseudobarrel domain
CDDcd100179.61E-14302390No hitNo description
SMARTSM010198.5E-9303392IPR003340B3 DNA binding domain
PfamPF023622.4E-12303378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGRDSFKRKR EPISDYSDSP VEISSEEDII KPSKPPPPLV KKIVTFAKTM DASSITYSRM  60
YIPLGFLNEA GIRSDMSIEL RDRKGRLWPV TLSYNSRKLS SGWKSFVDNN GVKIGNRVLF  120
SFKPGGNGQG SRLPFSSLDK LRWVVKSQNR VFLMIKTKLF FHQKIPWKAA AGLGKKIHLR  180
ASNIRGRAWR VAVETMGENL FFAGGGWKAF SRDVHLKLGE YIFFSRTGRS EFEASVYEIT  240
GCERDLRIPV SESETSSETG RGSIKREQIS DSDSMGDSPI EISGEEDTKR TKPPPVVKKS  300
ISFAKTMTFS NIKNRMFLPV KFLNEAGIRG SMSIEVRDGK GRSWPMILNY KSRNLWGWRS  360
FVRNHGVQTG NTVVFSFEPG GNVLEAIIHK KKTVRKGLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8BVG00.0S8BVG0_9LAMI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-10B3 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]