PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57904.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 193aa    MW: 21926.7 Da    PI: 9.2175
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57904.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.71.1e-2183133155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIrdp   gk kr++lg+f+taeeAa+ +++a+ +l+g
  EPS57904.1  83 KKFRGVRQRP-WGKWAAEIRDP---GKGKRVWLGTFDTAEEAAAVYDRAAVRLRG 133
                 59********.**********8...545*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.98E-3383143No hitNo description
PROSITE profilePS5103224.36884141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3184142IPR001471AP2/ERF domain
PfamPF008471.1E-1384133IPR001471AP2/ERF domain
SMARTSM003802.0E-3784147IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2384142IPR016177DNA-binding domain
PRINTSPR003674.1E-118596IPR001471AP2/ERF domain
PRINTSPR003674.1E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
LVNFKDRVIV THKFLNQSKT PEKNTRRRVV RLVVHDAYAT DTDSSEDDSD VVATRRRRHV  60
EEITFDLSDL RQKKRRVAVD SRKKFRGVRQ RPWGKWAAEI RDPGKGKRVW LGTFDTAEEA  120
AAVYDRAAVR LRGPDAAINF PATESGRAAV SPPPNDGVLS PTSVLFHEDL TEFDLPLWCN  180
FGLDLDCPMN LPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2383141160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2383141463ATERF1
3gcc_A2e-2383141463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15575RRRHVEEITFDLSDLRQKKRR
27083RQKKRRVAVDSRKK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080643.12e-47pathogenesis-related genes transcriptional activator PTI6
SwissprotO046828e-42PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLS8BU771e-138S8BU77_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009607079.11e-44(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.15e-20cytokinin response factor 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]