PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 40197.3 Da PI: 8.359 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.1 | 1.2e-06 | 133 | 153 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck+Gd C ++Hg EPS57796.1 133 ACPEFRK-GACKRGDACEYSHG 153 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.8E-5 | 128 | 154 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.878 | 129 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-5 | 133 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 163 | 186 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.155 | 163 | 187 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
KVMMAGNRPR SNPTVQIPGW DHRYAEDPTV HIQSPISHGL SAGGSPDGPH FEQALAALQR 60 FLPSNSDDAF VAEGEDFDVP VDAFSCDNFR MFEFKVKKCA LARSHDWTAC PFAHPGEKAR 120 RRDPRKCHYS GTACPEFRKG ACKRGDACEY SHGVFECWLH PARYRTQPCK DGTHCRRRVC 180 FFAHTPEQLR VLPYSSAASP EASPGRFVQD SNTFFSAGPF GTSPTSALYS PPPSPPTSGS 240 PPVSPSGSMT LSQLASSMRS LHINKMKLNL GLSGSPPSWG LGVGSPPTVR PGFISLPSTP 300 IPAGKTPRGL AWGPPYEEEP EVERVESGKE LRERIYAKLG KENSLHRVGR VDPSVNLVQD 360 FGWVGELV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094664.1 | 1e-177 | zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | O82199 | 2e-98 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 2e-98 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | S8C014 | 0.0 | S8C014_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.A00165.1.p | 1e-158 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 2e-87 | C3H family protein |