PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C3H | ||||||||
Protein Properties | Length: 170aa MW: 20144.1 Da PI: 11.0638 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.7 | 6.3e-06 | 44 | 67 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Cr + + C++G+ C+F+H EPS57173.1 44 REATCRQYEE-DSCNRGGYCNFMHL 67 6789**9999.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.70.330 | 2.0E-9 | 1 | 39 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 1.36E-9 | 2 | 43 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 3.1E-16 | 24 | 48 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 10.333 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 3.1E-16 | 59 | 71 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
HQVGNVYVQF REEEHAANAL KNLTGRFYAG RPIIVDFSPV TDFREATCRQ YEEDSCNRGG 60 YCNFMHLKRI GRELRRQLFG KQRRRHSRSR SPQRHRSYED RSSHGSRGHS RKYDDGGDYH 120 ESRGRRHRSS SPGHRRGGRR PPPRSPAREG SEERRAKIEQ WNKEREEAEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 2e-26 | 1 | 84 | 102 | 185 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015960.1 | 4e-82 | PREDICTED: splicing factor U2af small subunit B | ||||
Refseq | XP_017983739.1 | 4e-82 | PREDICTED: splicing factor U2af small subunit B | ||||
Swissprot | Q9ZQW8 | 2e-52 | U2AFA_ORYSJ; Splicing factor U2af small subunit A | ||||
TrEMBL | S8D3A2 | 1e-119 | S8D3A2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | EOY33579 | 1e-81 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1061 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-10 | C3H family protein |
Publications ? help Back to Top | |||
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