PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_41256_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 720aa MW: 78389.1 Da PI: 6.7021

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_41256_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Cotton_A_41256_BGI-A2_v1.0 302 PCPDFHK-GACRRGDICEYAHG 322 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	1.0E-17	44	180	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.63E-14	45	165	No hit	No description
SuperFamily	SSF48403	4.04E-16	45	165	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.9E-9	83	156	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.714	87	180	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.016	87	117	IPR002110	Ankyrin repeat
SMART	SM00248	0.0016	122	154	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.369	122	157	IPR002110	Ankyrin repeat
SMART	SM00356	8.9E-4	297	323	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	302	322	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.389	302	324	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-4	330	360	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	36	332	355	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MCYGSEPINH SSNPTRSNNS FGDNRHPSVE MNRLTLETED IFASLLELAA NNDVEGLKRT 60 IEHDPSVVDE VGLWYGRRKG SKQMVHEERT PLMVAATYGS IGVIKLILSS SDADVNRVCG 120 HEKSTALHCA ASGGTVNAVD VVKLLLAAGA DANMVDANGH RPVDIIGFPP KLQAVKLTLQ 180 ELLATESSVI EQNLRVSTAV ANSGSLSPSR DNGSPSCSDS LPKLKSTAAP ISTLEKKEYP 240 MDPSLPDIKN SIYSTDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFHKGA CRRGDICEYA HGVFECWLHP AQYRTRLCKD GINCARRVCF FAHTAEELRP 360 LYVSTGSAVL SPRSGTSAAT AMDFAAALSL LPGSPSSVSV MSPSPFTSPI SPSAKGMPHS 420 NVAWPQPNVP ALHLPGSNLQ LSRLRSSLNA RDIPAEDFNL LPDFGVQQQQ LVNELSSLSQ 480 PSMSSNSMNR SGRLKTLTPS NLEDLFSTES SSPQYSDQAL AAVVFSPSHK SAVLNQFQQQ 540 SSMLSPINTN FSPKSKEHPL LQVSLSGRMS PRNVEPISPM SSRVSMLAQL EKQQFRCLSS 600 RELGSDSPAS ISSPVNSWSK WGSSNGKPDW AVNADELGKH HASFELSNGD EPDLSWVQSL 660 VKESPTEMKE KMKASVLDVP SNASKSEGSN TNSQVDPLDH TVLGAWLEQM QLDQLVALQN

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MCYGSEPINH SSNPTRSNNS FGDNRHPSVE MNRLTLETED IFASLLELAA NNDVEGLKRT  60
IEHDPSVVDE VGLWYGRRKG SKQMVHEERT PLMVAATYGS IGVIKLILSS SDADVNRVCG  120
HEKSTALHCA ASGGTVNAVD VVKLLLAAGA DANMVDANGH RPVDIIGFPP KLQAVKLTLQ  180
ELLATESSVI EQNLRVSTAV ANSGSLSPSR DNGSPSCSDS LPKLKSTAAP ISTLEKKEYP  240
MDPSLPDIKN SIYSTDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFHKGA CRRGDICEYA HGVFECWLHP AQYRTRLCKD GINCARRVCF FAHTAEELRP  360
LYVSTGSAVL SPRSGTSAAT AMDFAAALSL LPGSPSSVSV MSPSPFTSPI SPSAKGMPHS  420
NVAWPQPNVP ALHLPGSNLQ LSRLRSSLNA RDIPAEDFNL LPDFGVQQQQ LVNELSSLSQ  480
PSMSSNSMNR SGRLKTLTPS NLEDLFSTES SSPQYSDQAL AAVVFSPSHK SAVLNQFQQQ  540
SSMLSPINTN FSPKSKEHPL LQVSLSGRMS PRNVEPISPM SSRVSMLAQL EKQQFRCLSS  600
RELGSDSPAS ISSPVNSWSK WGSSNGKPDW AVNADELGKH HASFELSNGD EPDLSWVQSL  660
VKESPTEMKE KMKASVLDVP SNASKSEGSN TNSQVDPLDH TVLGAWLEQM QLDQLVALQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	82	GRRKGSKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017617555.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1U8NXB0	0.0	A0A1U8NXB0_GOSHI; zinc finger CCCH domain-containing protein 30-like
STRING	Gorai.003G093600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]