PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40741_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SAP
Protein Properties Length: 450aa    MW: 49471.4 Da    PI: 6.7596
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40741_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP696.92.3e-21214501455
                         SAP   1 msssssss...sseseegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvc 80 
                                 msssssss   ss+se+g+ +g+g  +++g++egps +r+r  ne+wp Pf+e l ++vaidasrs+G laaa a+anvfqvc
  Cotton_A_40741_BGI-A2_v1.0   1 MSSSSSSSassSSSSEDGNGNGHGARRGAGDFEGPSLTRRRGNNEIWPGPFVEDLVVKVAIDASRSIGSLAAAGAIANVFQVC 83 
                                 55555554000444445555556666677****************************************************** PP

                         SAP  81 stwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkyl 163
                                 stw+avsrsd lw+rlt+ iW rt++++ tW+eey+yrh+t++nfr +r+ +vtl+fdp+ vd    +d l+Crcl+lsd++l
  Cotton_A_40741_BGI-A2_v1.0  84 STWQAVSRSDPLWHRLTSVIWGRTHRMHTTWHEEYVYRHQTSQNFRLGRSVHVTLHFDPTGVDI---PDGLTCRCLTLSDTHL 163
                                 ************************************************************8888...689************* PP

                         SAP 164 aaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGa 246
                                 a+GfadG+vrlfdl+trlhv tf+pqh+dr+GrfsravsGi+i+d r++fatldGdi+va+i+g  + +arra++G++++dG 
  Cotton_A_40741_BGI-A2_v1.0 164 ACGFADGTVRLFDLATRLHVATFHPQHGDRFGRFSRAVSGIIITDPRIIFATLDGDIYVAIIEG--QHQARRAHIGNILDDGS 244
                                 ***************************************************************9..78*************** PP

                         SAP 247 lvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdl 329
                                 lvdf+G+grWwvGlyaGvpGra hiWd++teelv+v  +ltd e+++GWhmltelte++Grvrvt++e+avaCts + vv+dl
  Cotton_A_40741_BGI-A2_v1.0 245 LVDFTGCGRWWVGLYAGVPGRAIHIWDGNTEELVYVNTTLTDRESLRGWHMLTELTEAIGRVRVTSEESAVACTSNKYVVLDL 327
                                 *********************************************************************************** PP

                         SAP 330 rnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrgaqrgvlgCvnggyalvyaggvlrvWeie 412
                                 rn+   l+++e++rG+iv s+d++nea+++vd+rG a+vrr+++lee+crf+ r  q++++gC+n+gyal++a+gv+rvW ie
  Cotton_A_40741_BGI-A2_v1.0 328 RNPAFPLHDRESARGFIVNSFDTNNEAFIIVDNRGRAIVRRADTLEELCRFNTR--QGNLMGCMNLGYALLCAAGVIRVWGIE 408
                                 ****************************************************99..99************************* PP

                         SAP 413 kkegylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455
                                 + + ylys+ e +g v a+  ddrhvav+ss++tihl+dfgaq
  Cotton_A_40741_BGI-A2_v1.0 409 HGQ-YLYSFGENIGAVSAMAGDDRHVAVASSNSTIHLWDFGAQ 450
                                 966.*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813836.98E-676124IPR001810F-box domain
Gene3DG3DSA:1.20.1280.506.2E-676142No hitNo description
SMARTSM0032010131176IPR001680WD40 repeat
SuperFamilySSF509787.51E-16149285IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.6E-13154218IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.103.6E-13266282IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.103.6E-13338447IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509787.51E-16340446IPR017986WD40-repeat-containing domain
PROSITE profilePS502948.703400450IPR017986WD40-repeat-containing domain
SMARTSM003201.1409446IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSSSSSSSAS SSSSSEDGNG NGHGARRGAG DFEGPSLTRR RGNNEIWPGP FVEDLVVKVA  60
IDASRSIGSL AAAGAIANVF QVCSTWQAVS RSDPLWHRLT SVIWGRTHRM HTTWHEEYVY  120
RHQTSQNFRL GRSVHVTLHF DPTGVDIPDG LTCRCLTLSD THLACGFADG TVRLFDLATR  180
LHVATFHPQH GDRFGRFSRA VSGIIITDPR IIFATLDGDI YVAIIEGQHQ ARRAHIGNIL  240
DDGSLVDFTG CGRWWVGLYA GVPGRAIHIW DGNTEELVYV NTTLTDRESL RGWHMLTELT  300
EAIGRVRVTS EESAVACTSN KYVVLDLRNP AFPLHDRESA RGFIVNSFDT NNEAFIIVDN  360
RGRAIVRRAD TLEELCRFNT RQGNLMGCMN LGYALLCAAG VIRVWGIEHG QYLYSFGENI  420
GAVSAMAGDD RHVAVASSNS TIHLWDFGAQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6194523e-90JX619452.1 Gossypium hirsutum clone NBRI_GE65288 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648680.10.0PREDICTED: transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH11e-174SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A1U8P9F50.0A0A1U8P9F5_GOSHI; transcriptional regulator STERILE APETALA-like
STRINGGorai.001G191800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-172SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]