PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_39544_BGI-A2_v1.0

Common Name

F383_17099

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 276aa MW: 30592 Da PI: 4.8985

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_39544_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.8	6.1e-30	82	140	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dpk+++itY+ eHnh+ Cotton_A_39544_BGI-A2_v1.0 82 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRLDPKMLVITYSYEHNHP 140 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.4E-31	74	142	IPR003657	WRKY domain
PROSITE profile	PS50811	32.684	76	142	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-26	77	142	IPR003657	WRKY domain
SMART	SM00774	1.3E-36	81	141	IPR003657	WRKY domain
Pfam	PF03106	3.0E-25	83	140	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MDASDSNFNK AGNPFVSEQQ VEGNDNVSLE TGAESPPPST TFNDMKLPSP RKGRKPIQKR 60 VVSVPIKDVD SSRLKGESAP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCLARKQVE 120 RSRLDPKMLV ITYSYEHNHP WPASRNNTAA AKQAVAATEA ETPTMTTTAA VKPEPSTSQP 180 DTEPESGSEE RFADLTEDSI LKTRDEFGWL GEMETTSSTV LESQIFSERD NGEGDVGMVF 240 PMREEDELLF ADLGELPECS FVFRHQRKMG PQVGMC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	59	142	6	79	Disease resistance protein RRS1
5w3x_D	1e-20	59	142	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031088	0.0	KF031088.1 Gossypium hirsutum WRKY transcription factor 43 (WRKY43) mRNA, complete cds.
GenBank	KF669792	0.0	KF669792.1 Gossypium hirsutum WRKY transcription factor 85 (WRKY85) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016754065.1	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X1
Refseq	XP_017614345.1	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X1
Swissprot	Q9LP56	3e-77	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A1U8PSB5	0.0	A0A1U8PSB5_GOSHI; probable WRKY transcription factor 65 isoform X1
STRING	Gorai.010G161000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	5e-78	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]