PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_39442_BGI-A2_v1.0

Common Name

F383_23962

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 927aa MW: 100259 Da PI: 7.0188

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_39442_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.4	1.8e-15	512	550	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag +C+e C+C++C+N+ e Cotton_A_39442_BGI-A2_v1.0 512 CKRCNCKKTKCLKLYCDCFAAGIYCAEPCSCQGCFNRPE 550 79**********************************876 PP
2	TCR	49.3	9.8e-16	598	636	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeCf+a++ Cs C+Ce+CkN Cotton_A_39442_BGI-A2_v1.0 598 RHKRGCNCKRSMCLKKYCECFQANVGCSIGCRCEGCKNV 636 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.8E-16	510	551	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.751	511	638	IPR005172	CRC domain
Pfam	PF03638	2.8E-11	513	548	IPR005172	CRC domain
SMART	SM01114	2.2E-17	598	639	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.0E-11	600	635	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MDSPKLSKSP IPSASAFASA SASISSSSSP VQESPFSNYI SSLSPIKHDK AAHVAQGFVG 60 LSSPPLVFTS PRINTLGRPQ SSSVEISQKC EGDKKIINES CILERSVTES QEGLVTDIKN 120 EDNKDDVAVQ LGSSSECVDE YLADPVETDC AKSACSVKLN LKQSNNVLQS SVDGLLDLKN 180 IKFGSKNNVG REVDAAQFLS GQSEESIERK LTSDEKLLKI ENEQGSAQGI SDGFQKFESD 240 RFDLSSKEKE CKKFGPQKDG RGDGCSNFLQ QLPGSLLGVQ SYEGFAKNIG GDADVPVHSM 300 THEASELQRS MSRRCLQFGE AQPEATATCS ISTNRANNII SSTTLATNSE TESLSSSHLD 360 LSAKSRTRQL VNLSQLAMNM IPQCYGNSSL TVLKPSGIGL HLNSIVNATS MGQGGTASMK 420 LAQAIKSTST TSCQTTENID NCSDAFEKVS TPQEGALEQK VCTIAGSASE SLFAEESAGF 480 HMTPNTKRKF SSEDGDGNDM KKLSNSTDGD GCKRCNCKKT KCLKLYCDCF AAGIYCAEPC 540 SCQGCFNRPE YEETVLETRK QIESRNPLAF APKIVQPVTE FPLSNREDGN RKTPSSARHK 600 RGCNCKRSMC LKKYCECFQA NVGCSIGCRC EGCKNVYGKK KDYCVTEEMV NRSGEISESR 660 VAAKPKKEIF HSELCDPYHL TPLTPSVQCS DHGKNASISR LLSRRCLPSP ESELTVLSYA 720 KSPRSPRTSD SNDILLETSK GNLDIDSFCE GISYNNAVTL ADEFHHTPLP NHPSVIIGSS 780 SSKARELTSL SRVQLDPRSR SLTSGGSLHW HSSPIMPMSP LNDNKKLQGL DSADGGLYDI 840 LEDDMPEILK DTSMPIKPVK AGSPNGKRVS PPHNLHQLGS SSSGPLRSGR KFILKAVPSF 900 PPLTPCIDAK GSCNQSRNNF QENRSND

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MDSPKLSKSP IPSASAFASA SASISSSSSP VQESPFSNYI SSLSPIKHDK AAHVAQGFVG  60
LSSPPLVFTS PRINTLGRPQ SSSVEISQKC EGDKKIINES CILERSVTES QEGLVTDIKN  120
EDNKDDVAVQ LGSSSECVDE YLADPVETDC AKSACSVKLN LKQSNNVLQS SVDGLLDLKN  180
IKFGSKNNVG REVDAAQFLS GQSEESIERK LTSDEKLLKI ENEQGSAQGI SDGFQKFESD  240
RFDLSSKEKE CKKFGPQKDG RGDGCSNFLQ QLPGSLLGVQ SYEGFAKNIG GDADVPVHSM  300
THEASELQRS MSRRCLQFGE AQPEATATCS ISTNRANNII SSTTLATNSE TESLSSSHLD  360
LSAKSRTRQL VNLSQLAMNM IPQCYGNSSL TVLKPSGIGL HLNSIVNATS MGQGGTASMK  420
LAQAIKSTST TSCQTTENID NCSDAFEKVS TPQEGALEQK VCTIAGSASE SLFAEESAGF  480
HMTPNTKRKF SSEDGDGNDM KKLSNSTDGD GCKRCNCKKT KCLKLYCDCF AAGIYCAEPC  540
SCQGCFNRPE YEETVLETRK QIESRNPLAF APKIVQPVTE FPLSNREDGN RKTPSSARHK  600
RGCNCKRSMC LKKYCECFQA NVGCSIGCRC EGCKNVYGKK KDYCVTEEMV NRSGEISESR  660
VAAKPKKEIF HSELCDPYHL TPLTPSVQCS DHGKNASISR LLSRRCLPSP ESELTVLSYA  720
KSPRSPRTSD SNDILLETSK GNLDIDSFCE GISYNNAVTL ADEFHHTPLP NHPSVIIGSS  780
SSKARELTSL SRVQLDPRSR SLTSGGSLHW HSSPIMPMSP LNDNKKLQGL DSADGGLYDI  840
LEDDMPEILK DTSMPIKPVK AGSPNGKRVS PPHNLHQLGS SSSGPLRSGR KFILKAVPSF  900
PPLTPCIDAK GSCNQSRNNF QENRSND

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-18	513	636	12	121	Protein lin-54 homolog
5fd3_B	8e-18	513	636	12	121	Protein lin-54 homolog
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ908232	6e-47	DQ908232.1 Gossypium hirsutum clone LIB5327-014-A1-N1-A9_Gh292 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017616017.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
Refseq	XP_017616025.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBL	A0A1U8NU05	0.0	A0A1U8NU05_GOSHI; protein tesmin/TSO1-like CXC 2 isoform X1
STRING	Gorai.013G110900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15196	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-62	Tesmin/TSO1-like CXC domain-containing protein