PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_39303_BGI-A2_v1.0

Common Name

F383_33331

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 684aa MW: 74607.7 Da PI: 6.3676

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_39303_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	273	293	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Cotton_A_39303_BGI-A2_v1.0 273 PCPDFRK-GACRRGDMCEYAHG 293 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	1.6E-18	11	141	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.11E-16	15	135	No hit	No description
SuperFamily	SSF48403	1.27E-17	15	136	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.9E-10	52	126	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0092	57	87	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	17.475	57	151	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	5.6E-5	58	73	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.449	92	127	IPR002110	Ankyrin repeat
SMART	SM00248	6.1E-5	92	124	IPR002110	Ankyrin repeat
PRINTS	PR01415	5.6E-5	111	125	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	268	294	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.0E-5	273	293	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-4	273	295	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	273	295	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-4	301	331	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	65	303	326	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MNHLTLVTDD TFASLLELAA NNDVEGFKLW IEHDPFSVDE VGLWYGRQKG SKQMVNEERT 60 PLMVASTYGS IDVIKLIISS SDADVNRVCG RDKSTALHCA ASGGADNVID VVKLLLAAGA 120 DVNMVDANGH LPVDVIVVPP KLRDVKLTLE KLLATESSCF DSRVAAVANS DSPPLSPSQE 180 NGSLFSGSDS LIKSRPTDAP ISLVSEKKEY PIDPSLPDIK NSIYSTDEFR MYSFKVRPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPDFRKG ACRRGDMCEY AHGVFECWLH 300 PAQYRTRLCK DGTSCARRVC FFAHTAEELR PLYVSTGSAV PSPRSSTSGA TAMDFAAAMS 360 LLPGSPSSVS VISPSPFTPP MSPSVNGMPH SNVGWPQPNV PALHLPGSNL QSSRLRSSLN 420 ARDIQAEDFN VLPDFDLQQH QLINELSSLT QPSMSSSSFN RSGRMKTMTP SNLDDLFSAE 480 SLSPRYSDQA LAAAVFSPTH KSAVLNQFQQ QQSMLSPINT NYSPKSIEHP LLQASLSGRM 540 SPRNVEPISP MSSRVSMLAQ REKQQEFRSL SSRELGSGLA AIVGSPVNSW SKWGSSNGKP 600 DWAVNADGVG KHRRSSSFEH GNGDEPDLSW VQSLVKESPT EIKDKIAAPV SGEGSSRNSD 660 TVDNAMLGAW LEQMQLDQLV AQQN

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MNHLTLVTDD TFASLLELAA NNDVEGFKLW IEHDPFSVDE VGLWYGRQKG SKQMVNEERT  60
PLMVASTYGS IDVIKLIISS SDADVNRVCG RDKSTALHCA ASGGADNVID VVKLLLAAGA  120
DVNMVDANGH LPVDVIVVPP KLRDVKLTLE KLLATESSCF DSRVAAVANS DSPPLSPSQE  180
NGSLFSGSDS LIKSRPTDAP ISLVSEKKEY PIDPSLPDIK NSIYSTDEFR MYSFKVRPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPDFRKG ACRRGDMCEY AHGVFECWLH  300
PAQYRTRLCK DGTSCARRVC FFAHTAEELR PLYVSTGSAV PSPRSSTSGA TAMDFAAAMS  360
LLPGSPSSVS VISPSPFTPP MSPSVNGMPH SNVGWPQPNV PALHLPGSNL QSSRLRSSLN  420
ARDIQAEDFN VLPDFDLQQH QLINELSSLT QPSMSSSSFN RSGRMKTMTP SNLDDLFSAE  480
SLSPRYSDQA LAAAVFSPTH KSAVLNQFQQ QQSMLSPINT NYSPKSIEHP LLQASLSGRM  540
SPRNVEPISP MSSRVSMLAQ REKQQEFRSL SSRELGSGLA AIVGSPVNSW SKWGSSNGKP  600
DWAVNADGVG KHRRSSSFEH GNGDEPDLSW VQSLVKESPT EIKDKIAAPV SGEGSSRNSD  660
TVDNAMLGAW LEQMQLDQLV AQQN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017615677.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0B0MX95	0.0	A0A0B0MX95_GOSAR; Uncharacterized protein
STRING	Gorai.002G152400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]