PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38952_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 323aa    MW: 37471.9 Da    PI: 4.7788
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38952_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-07227246625
                                 -SGGGGTS--TTTTT-SS-S CS
                     zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                                 C+f+++tG C++G rC++ H
  Cotton_A_38952_BGI-A2_v1.0 227 CPFHLKTGACRFGQRCSRVH 246
                                 ******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.23221249IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-5226246IPR000571Zinc finger, CCCH-type
PRINTSPR018481.2E-12227246IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.2E-12246266IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAEAEAAISK QEEGGQRENH PMTKGRKEKR KEIKKMKRKQ LRKEAAEKER EAEEAWLNDP  60
EEQKRIAREE EEERKRRELA LREFEERERA WIEAMDIKRK AQEDEEEQQK RRDDSEDANG  120
EQRQQEDRGD DWEYVEEGPA EIIWQGNEII VRKKKVRAPK GEAIQKCKEE DLEGFCTQDA  180
DRPTSNPLPP QSEAFSDYLN TSSAQEVLES VAKEVPNFGT EQDKAHCPFH LKTGACRFGQ  240
RCSRVHFYPD KSCTLLMRNM YNGPGLALEQ DEGLELFFLA VVITISVRLH NLLFSHSLVD  300
SSIPDYVVEC FVCLAIDNLS NVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5860545e-79JX586054.1 Gossypium hirsutum clone NBRI_GE19787 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606259.11e-160PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1
SwissprotQ9SY744e-94C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0B0MVT41e-159A0A0B0MVT4_GOSAR; Uncharacterized protein
STRINGGorai.005G120000.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59752025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.17e-71C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]