PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38917_BGI-A2_v1.0
Common NameF383_13638
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 296aa    MW: 33129.4 Da    PI: 6.787
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38917_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.42.1e-4271061100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrrkC+++Cv+apyfp ++p+kf+nvhk++Gasnv kll++l++++re+a++sl+yeAear++dPvyG+vg+i+ l
  Cotton_A_38917_BGI-A2_v1.0   7 PCAACKFLRRKCTQECVFAPYFPPDHPQKFQNVHKVYGASNVAKLLNELNPSQREEAVTSLAYEAEARLQDPVYGCVGLISIL 89 
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 q++l+q++++l  +k+e
  Cotton_A_38917_BGI-A2_v1.0  90 QHRLKQMQHDLGNAKKE 106
                                 **********9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6256107IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-427103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DHPQKFQNVH KVYGASNVAK LLNELNPSQR  60
EEAVTSLAYE AEARLQDPVY GCVGLISILQ HRLKQMQHDL GNAKKELSTY IGPQALLPIL  120
QPPVFFPQQH LGNPSSMMQH NMMPMMGIPT AASLSHGGQL VIREPQQQQQ QFFEPQQRMA  180
AVVAAREQQD FLRGYEQQQL HHQQQPDMLR FNNSGFEGAG SVTATGFNQI AAMSPSLALG  240
CFDNLYQIQP QEQDHPHHHS HGTLPFQSQL LLQPLQEQPQ VHLRSESEEG TSTGPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4831107114LOB family transfactor Ramosa2.1
5ly0_B1e-4831107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636419.10.0PREDICTED: LOB domain-containing protein 36
SwissprotQ9FKZ31e-83LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A1U8M5R20.0A0A1U8M5R2_GOSHI; LOB domain-containing protein 36-like
TrEMBLA0A2P5WZP50.0A0A2P5WZP5_GOSBA; Uncharacterized protein
STRINGGorai.008G073400.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80082441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.16e-76ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]