PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_38499_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 204aa MW: 23288.7 Da PI: 6.7584

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_38499_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	105.9	6.6e-33	80	140	2	62
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62 r+g+++CqdCGnqakkdCah RCRtCCks+gf+C+thvkstWvpaakrre+q q+ +++++ Cotton_A_38499_BGI-A2_v1.0 80 RQGGINCQDCGNQAKKDCAHLRCRTCCKSHGFQCQTHVKSTWVPAAKRREKQPQNPQQQQQ 140 7899***********************************************9888776654 PP
2	DUF702	85.3	1.5e-26	145	203	97	154
DUF702 97 kkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++ le +++P+ev+s+avfrcv+v+++d+ +e++laYqtav+igGhvfkGiLydqG+e+ Cotton_A_38499_BGI-A2_v1.0 145 NQGLELAQFPSEVNSPAVFRCVKVNAMDEvEEDQLAYQTAVNIGGHVFKGILYDQGPEN 203 56788999*******************99999*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-29	83	141	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-26	85	127	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	1.5E-22	151	202	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	4.4E-26	152	201	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MAGFFYLGGR QDEDKEENLN LYRNEEICNK GFEIWPHYNY YQQQQNVNNQ SFGAGPSRRT 60 SGLNLSDEWS SRSVGFTDMR QGGINCQDCG NQAKKDCAHL RCRTCCKSHG FQCQTHVKST 120 WVPAAKRREK QPQNPQQQQQ FRGENQGLEL AQFPSEVNSP AVFRCVKVNA MDEVEEDQLA 180 YQTAVNIGGH VFKGILYDQG PENH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616053	1e-120	JX616053.1 Gossypium hirsutum clone NBRI_GE60429 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648618.1	1e-153	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	8e-63	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0D2RJ51	1e-151	A0A0D2RJ51_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JTA6	1e-151	A0A1U8JTA6_GOSHI; protein SHI RELATED SEQUENCE 5-like
STRING	Gorai.005G110600.1	1e-152	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28518	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	7e-41	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]