PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37864_BGI-A2_v1.0
Common NameF383_33721
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 306aa    MW: 35259.3 Da    PI: 8.8779
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37864_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.59.9e-2046131282
                    trihelix   2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                                 Wt qe+l+Li+a+r ++er  +      +k  + +W+++ ++++++g+ rs++qC++kw+nl ++ykk+++ ++++ s+s+s+
  Cotton_A_37864_BGI-A2_v1.0  46 WTIQETLTLITAKRLDDERRAKpstsspSKPGELRWKWIENYCWDHGCFRSQNQCNDKWDNLLRDYKKVRQYQSSH-SQSQSS 127
                                 **************77777775333333468899*****************************************9.566667 PP

                    trihelix  79 cpyf 82 
                                 +p++
  Cotton_A_37864_BGI-A2_v1.0 128 HPFL 131
                                 8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.38738108IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-438110IPR009057Homeodomain-like
PfamPF138374.5E-1445137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSNPLPPPPP STHHHQHQPL NIITPATTSA TTMTSAANRE YRKGNWTIQE TLTLITAKRL  60
DDERRAKPST SSPSKPGELR WKWIENYCWD HGCFRSQNQC NDKWDNLLRD YKKVRQYQSS  120
HSQSQSSHPF LSYWSMERHQ RKLHNLPTNM SPEVFEALND VLQRKLNTQQ QPHLHQPSFS  180
QSSEQLPLKT DQNPPEIDAP VTVSEESDSS ETESSENLDS KTKRKKVRKI GSSIMRSASV  240
LAQTLKSCEE NKEKRHQQVM ELEQRRLQIE ETRNEVNRKG ITDLVAAMTN LSGAIQSLIA  300
NHYDQT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640866.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A0B0N1V40.0A0A0B0N1V4_GOSAR; Trihelix transcription factor GT-4-like protein
STRINGGorai.002G169000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.18e-47Trihelix family protein