PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37135_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 232aa    MW: 26381.8 Da    PI: 10.6181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37135_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84e-11108149351
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Cotton_A_37135_BGI-A2_v1.0 108 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 149
                                 79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-4107164IPR001471AP2/ERF domain
PfamPF008471.9E-5107150IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-7108152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-6110154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGTSSFF TPLSRFFDNG NAPGNSSQSA KLVTVHPMPS DPIHMNGKSI  60
PKVASGSPNV SGSGSSKEHH NQPFPGQPIK RRKRHRRKHV QNQEQCLMRG VYFKNMKWQA  120
AIKVDKKQIH LGTVGSQEEA AHLYDRAAFM CGREPNFELS EEEKQELRKF KWEEFLAYTR  180
RSITNKKYKR RLGKVEPQKR SEPAMENSEW DNKQGVNSFS ASEEFGPDSS AS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743547.11e-174PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016743548.11e-174PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016743549.11e-174PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_017626354.11e-174PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1U8NX581e-173A0A1U8NX58_GOSHI; ethylene-responsive transcription factor-like protein At4g13040
STRINGGorai.001G188300.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-48ERF family protein