PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37018_BGI-A2_v1.0
Common NameF383_37142
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31226.2 Da    PI: 8.2093
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37018_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.9e-20136190256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 rk+ ++tkeq   Lee F+++++++ ++++ LAk+l+Lt rqV vWFqNrRa+ k
  Cotton_A_37018_BGI-A2_v1.0 136 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTK 190
                                 788899***********************************************98 PP
2HD-ZIP_I/II124.93.6e-40136225191
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk+rl+keq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke
  Cotton_A_37018_BGI-A2_v1.0 136 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKE 218
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreel 91 
                                  +eL+ +l
  Cotton_A_37018_BGI-A2_v1.0 219 LQELK-AL 225
                                 ****9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.799132192IPR001356Homeobox domain
SuperFamilySSF466892.4E-19134200IPR009057Homeodomain-like
SMARTSM003892.1E-17134196IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-18136190IPR009057Homeodomain-like
PfamPF000463.8E-17136190IPR001356Homeobox domain
CDDcd000866.65E-19136193No hitNo description
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
SMARTSM003404.0E-24192235IPR003106Leucine zipper, homeobox-associated
PfamPF021835.3E-10192226IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGLDDDACNT GLVLGLGFSS ALETPSKKPS CLKFEQPATT VAPPTTFEPS LTLGLFGDQG  60
YQVTKKSDVN KSGYLHHHEE PGAGDLYRRQ ASPHSAVSSF SSGRVKRERE VSSEELEVEK  120
NSSRVSDEDE DGVNARKKLR LTKEQSALLE ESFKQHSTLN PKQKQALAKQ LNLTPRQVEV  180
WFQNRRARTK LKQTEVDCEF LKKCCETLTD ENRRLQKELQ ELKALKLAAQ PFYMHMPAAT  240
LTMCPSCERI GGVADGNSKS PFSVASKPHF YNPYSNPSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1347930.0HM134793.1 Gossypium hirsutum homeodomain-leucine zipper protein HD4 (HB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314305.10.0homeobox-leucine zipper protein HAT22-like
RefseqXP_016734784.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
RefseqXP_017634922.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-104HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0B0MG260.0A0A0B0MG26_GOSAR; Homeobox-leucine zipper HAT22-like protein
TrEMBLE2FGB70.0E2FGB7_GOSHI; Homeodomain-leucine zipper protein HD4
STRINGGorai.008G086700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-84HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]