PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_36884_BGI-A2_v1.0 | ||||||||
Common Name | F383_32453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 25649.4 Da PI: 8.6122 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86.6 | 3.5e-27 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C++C+vlr++C+++C+++p++ +++q++++ +++k++G++ +++l+ p++ r+ +++sl+yeA+ r+ dPv+G+vg Cotton_A_36884_BGI-A2_v1.0 4 SCNGCRVLRKGCTESCTIRPCLqwipsAQSQANATLFLAKFYGRAGLINLICGGPQNLRPGVFKSLLYEACGRIVDPVHGSVG 86 6*********************9996555778*************************************************** PP DUF260 79 vilklqqqleqlkaelallke 99 ++ +++++l++++++++l ++ Cotton_A_36884_BGI-A2_v1.0 87 LMCSGNWHLCEAAVDAVLNGA 107 *************99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.718 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-23 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCTESCT IRPCLQWIPS AQSQANATLF LAKFYGRAGL INLICGGPQN 60 LRPGVFKSLL YEACGRIVDP VHGSVGLMCS GNWHLCEAAV DAVLNGAPIK QVPSELSATK 120 CPPLKSSFDI RHVSKDKKSN DGLRKVKSRG RFKRSASKPK PKLEEVVFEP VSKGGDSWEG 180 DCLSVETVEG SLAKGDELGD GSDLELELTL GLEPRTKNRG NNINGRGDAT CGGRVEGLC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610065.1 | 1e-174 | PREDICTED: LOB domain-containing protein 40-like isoform X2 | ||||
Swissprot | Q9CA30 | 1e-66 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A0B0MZS2 | 1e-173 | A0A0B0MZS2_GOSAR; LOB domain-containing 42-like protein | ||||
STRING | Gorai.006G061200.1 | 1e-154 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18027 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 7e-69 | LOB domain-containing protein 42 |