PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36662_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 249aa    MW: 28238.2 Da    PI: 4.6392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36662_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-2068117255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +grW+AeIrdp++   r+r++lg+++taeeAa  +++a+ +++g
  Cotton_A_36662_BGI-A2_v1.0  68 KYRGVRRRP-WGRWAAEIRDPTS---RTRVWLGTYDTAEEAALVYDRAAIRIKG 117
                                 8********.**********965...4***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-3068125IPR001471AP2/ERF domain
SMARTSM003801.6E-3668131IPR001471AP2/ERF domain
PROSITE profilePS5103223.76268125IPR001471AP2/ERF domain
PfamPF008472.4E-1468117IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2268124IPR016177DNA-binding domain
CDDcd000184.35E-3468124No hitNo description
PRINTSPR003676.0E-116980IPR001471AP2/ERF domain
PRINTSPR003676.0E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MESNAKASRI VKVCVTDGDA TDSSSSEKPE HRRAKRNVNG IRVKDCKSNL SSMKSKKQQQ  60
QCLSNGVKYR GVRRRPWGRW AAEIRDPTSR TRVWLGTYDT AEEAALVYDR AAIRIKGPNA  120
LTNFVKPPST SEIELETISE YNSSQESQAL SSPTSVLRFR ANEETELQIE SEDNSHADQV  180
PKDASNLSDE YLLADCGLCD YFNNDNPAPI FFEQMMLPED NIFEQDRVDI SVKLDVDFES  240
CTWDVDNYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2264124162ATERF1
3gcc_A9e-2264124162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635532.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotO823394e-49CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLA0A0D2U2091e-169A0A0D2U209_GOSRA; Uncharacterized protein
TrEMBLA0A1U8N8S61e-169A0A1U8N8S6_GOSHI; ethylene-responsive transcription factor CRF6-like
STRINGGorai.008G123400.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.15e-44cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]