PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_36436_BGI-A2_v1.0 | ||||||||
Common Name | F383_23281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 168aa MW: 19203.6 Da PI: 9.7274 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.9 | 2.4e-10 | 6 | 50 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +Er+RR +++ +++L +l+P+ +s+ s + L +A++YIk L Cotton_A_36436_BGI-A2_v1.0 6 IERNRRIQMKALYSKLNSLVPHH---SSREaISLPDQLDEATNYIKRL 50 8*********************7...55555***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.823 | 1 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.9E-4 | 4 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 4 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-11 | 5 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.31E-5 | 6 | 55 | No hit | No description |
Pfam | PF00010 | 2.0E-6 | 6 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MDRKFIERNR RIQMKALYSK LNSLVPHHSS REAISLPDQL DEATNYIKRL KANLERMKEM 60 KDGLRGLEER GNTSRSYGSK SPQIQIQEIG SSLAIALNTG FNSQFIFNET IRIVHEERAE 120 VVNANFSVVD DDTVFHTIHL KTGEPSTAAR ISQRLNKFVH DADASNKY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645318.1 | 1e-122 | PREDICTED: transcription factor bHLH36-like | ||||
Swissprot | F4JIJ7 | 4e-41 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A1U8M5W3 | 1e-120 | A0A1U8M5W3_GOSHI; transcription factor bHLH36-like | ||||
STRING | Gorai.010G154100.1 | 1e-114 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-43 | bHLH family protein |
Publications ? help Back to Top | |||
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