PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36237_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 328aa    MW: 36050.8 Da    PI: 4.3581
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36237_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.11.3e-15161217359
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                                  lkr rrk +NRe+ArrsR+RK+++++eLe  +++L +eN++L k+l +  +++  +
  Cotton_A_36237_BGI-A2_v1.0 161 HLKRLRRKLSNRESARRSRKRKQEQLAELEFQAEQLRGENDSLFKQLTNAHQLIRDV 217
                                 58******************************************9999988887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.3E-11158210No hitNo description
SMARTSM003384.0E-14159223IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955161207IPR004827Basic-leucine zipper domain
PfamPF001701.5E-12161213IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11162213No hitNo description
CDDcd147024.49E-18164212No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MKRSASELAL EEFSRNTLST TTIAAPSAFP DFALHPPIAH LSNSFHFTEF PRDAAEFSPQ  60
THVLLSQTLT SHLDSQSSFC GNESWGSTVC EGNNSNYRSR ENEVRGATTP SSDHDQSDDD  120
DDDVEEEDDD DDDEDEEGGE GEGEVEEADA GQSEQSLDPS HLKRLRRKLS NRESARRSRK  180
RKQEQLAELE FQAEQLRGEN DSLFKQLTNA HQLIRDVGTN NRVLTSNVQA LRHKVKLAED  240
MLAGGSFTCG LNQLVQSHLT SQQPIATNNH NLGRVVNVSP TITVQGDSSS YAGFTDMGNS  300
PNLGLPTLDF TNSNQNNIGI GGDAMSWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161168LKRLRRKL
2165181RRKLSNRESARRSRKRK
3175181RRSRKRK
4175182RRSRKRKQ
5177182SRKRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9641831e-118JX964183.1 Gossypium hirsutum clone NBRI_TRANS-452 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643990.10.0PREDICTED: basic leucine zipper 9-like
TrEMBLA0A0D2R6T70.0A0A0D2R6T7_GOSRA; Uncharacterized protein
STRINGGorai.010G124200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-39basic leucine zipper 9