PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_36167_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 669aa MW: 77919.6 Da PI: 7.1984

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_36167_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.9	1.6e-23	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 ++Yn YAke GF +r+s+s +++++e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ ++el Cotton_A_36167_BGI-A2_v1.0 59 DYYNIYAKEQGFGIRVSNSWFRTKKKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIRLVDSKRWRIVEVEL 136 59**************************************99888.....9************************** PP FAR1 84 eHnHela 90 eHnH+++ Cotton_A_36167_BGI-A2_v1.0 137 EHNHQVS 143 **987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-21	59	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-27	266	358	IPR018289	MULE transposase domain
Pfam	PF04434	1.5E-4	552	585	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.532	552	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MEEVCLNSEP VFDMVDEYEV EGDCSAVEHD DETGSKHSKK EPPLPTIGLE FDSFDEAYDY 60 YNIYAKEQGF GIRVSNSWFR TKKKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV 120 IRLVDSKRWR IVEVELEHNH QVSPQIKRFY KSHKKMILAA RKARPPAEPV TEIHTIKLYR 180 TAAMDAVSNG FSNVSEREGI HQPDHSKHLE LKEGDAYAVY NFFCRMKLTN PNFFYLMDFD 240 DDSRLKNVFW ADARSRAAYG YFSDTVAIDT TCLTSKYELP LISFVGVNHH GQSVLLGCGF 300 LGHKSVEYFV WIFRAWLKCM LGHQPQVIVT DQCKPLQIAV SEVFPKARHC FCLWYIMQRV 360 PEKLGGLRGF EEIKRQLNKA VYNSLKIIEF ETSWTEMIKK HGLGDNKWLQ TLYEERKQWV 420 PVYLKDTFFS GMIPIRENES LNAFFDGYVH KHTSFKEFVD KYDLALYRKH LKEATADVQS 480 KNSSFELKTR CNFEVQLSKA YTKEIFDKFQ SEVEGMYSCF NTRQVTANGP IVTYIVKERV 540 EIEGNEKEVR SYEVLFETNQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EVPSRYILRR 600 WCKDFKFQHV DRGSTDIDVY SPVDRQSHFH NYAVPIVEGG AQSEEQYKIA LHELQELLNK 660 FNLVDDSLV

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MEEVCLNSEP VFDMVDEYEV EGDCSAVEHD DETGSKHSKK EPPLPTIGLE FDSFDEAYDY  60
YNIYAKEQGF GIRVSNSWFR TKKKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV  120
IRLVDSKRWR IVEVELEHNH QVSPQIKRFY KSHKKMILAA RKARPPAEPV TEIHTIKLYR  180
TAAMDAVSNG FSNVSEREGI HQPDHSKHLE LKEGDAYAVY NFFCRMKLTN PNFFYLMDFD  240
DDSRLKNVFW ADARSRAAYG YFSDTVAIDT TCLTSKYELP LISFVGVNHH GQSVLLGCGF  300
LGHKSVEYFV WIFRAWLKCM LGHQPQVIVT DQCKPLQIAV SEVFPKARHC FCLWYIMQRV  360
PEKLGGLRGF EEIKRQLNKA VYNSLKIIEF ETSWTEMIKK HGLGDNKWLQ TLYEERKQWV  420
PVYLKDTFFS GMIPIRENES LNAFFDGYVH KHTSFKEFVD KYDLALYRKH LKEATADVQS  480
KNSSFELKTR CNFEVQLSKA YTKEIFDKFQ SEVEGMYSCF NTRQVTANGP IVTYIVKERV  540
EIEGNEKEVR SYEVLFETNQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EVPSRYILRR  600
WCKDFKFQHV DRGSTDIDVY SPVDRQSHFH NYAVPIVEGG AQSEEQYKIA LHELQELLNK  660
FNLVDDSLV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017642982.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_017642983.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1U8PV23	0.0	A0A1U8PV23_GOSHI; protein FAR1-RELATED SEQUENCE 6-like
STRING	Gorai.010G116000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]