PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35682_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 355aa    MW: 40623.4 Da    PI: 6.3081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35682_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004789111323
                                 ET..TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                                 C+   Cgk+F +   L++H   H
  Cotton_A_35682_BGI-A2_v1.0  89 CSyeGCGKTFIDAGALRKHSHIH 111
                                 77779**************7766 PP
2zf-C2H217.41.3e-05116140123
                                 EEET..TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                 y+C+   Cgk F ++s LkrH   H
  Cotton_A_35682_BGI-A2_v1.0 116 YVCHweGCGKKFLDSSKLKRHFLIH 140
                                 9********************8877 PP
3zf-C2H2157.3e-05146172123
                                 EEET....TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCp....dCgksFsrksnLkrHirtH 23 
                                 + Cp    dCgk++ + + Lk+Hi +H
  Cotton_A_35682_BGI-A2_v1.0 146 FICPhegcDCGKRYAHEYKLKNHIASH 172
                                 78999999*****************96 PP
4zf-C2H213.90.00016211236123
                                 EEET..TTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                 y Cp   C k + + + Lk H+r+ H
  Cotton_A_35682_BGI-A2_v1.0 211 YACPyeGCEKAYIHEYKLKLHLRReH 236
                                 89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.7E-1482113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003287111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78387116IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-688112No hitNo description
PROSITE patternPS00028089111IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-10111153No hitNo description
Gene3DG3DSA:3.30.160.601.6E-14114136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011116140IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.921116145IPR007087Zinc finger, C2H2
PROSITE patternPS000280118140IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-13137174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.598146177IPR007087Zinc finger, C2H2
SMARTSM003550.76146172IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.77E-5206234No hitNo description
Gene3DG3DSA:3.30.160.603.5E-9206234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0089211236IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972211241IPR007087Zinc finger, C2H2
PROSITE patternPS000280213236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEMQYAHGLF ERRPILKSKA PAVKWFKRWV PQDVVATGGK CMILKWADLT FLTQLFCLEN  60
TLKALNDKEK EPEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHW  120
EGCGKKFLDS SKLKRHFLIH TGERDFICPH EGCDCGKRYA HEYKLKNHIA SHHEKNTTPE  180
VAKYAPPLEK IVKTTKPTGG AYGSASSDRP YACPYEGCEK AYIHEYKLKL HLRREHPGHM  240
SDENAENATA NADNEMDEAS DQDAYAGKRV NGKSQKQQSR AKPNVKMPPA KVARQKGSSP  300
SPATLPIPKK QWPIKEQVFE EEDSEETEED RDNVDDGWRY RENNEDDDEE TEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-25892328117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711659.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_016711660.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_016711661.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_016711662.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017627392.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017627393.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017627394.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017634478.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017634479.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017634480.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017643203.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017643204.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017643205.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017646750.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017646751.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
RefseqXP_017646752.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L31e-130YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A1U8LAN20.0A0A1U8LAN2_GOSHI; uncharacterized zinc finger protein At4g06634-like
STRINGGorai.002G214700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]