PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_35583_BGI-A2_v1.0 | ||||||||
Common Name | F383_11178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 37458.5 Da PI: 8.2664 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.5 | 4.2e-56 | 13 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeel+++yL kkv g +++ +i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyW Cotton_A_35583_BGI-A2_v1.0 13 LPPGFRFHPTDEELIHQYLYKKVLGINFSS-IAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYW 94 79*************************999.78***************888999***************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkdke++ +++lvg+kktLvfy+grapkg kt+Wvmheyrl Cotton_A_35583_BGI-A2_v1.0 95 KATGKDKEIYM-GKSLVGMKKTLVFYQGRAPKGAKTNWVMHEYRL 138 ***********.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-63 | 10 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.973 | 13 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-29 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MANIGEEDDK MDLPPGFRFH PTDEELIHQY LYKKVLGINF SSIAIGEVDL NKSEPWDLPW 60 KAKMGEKEWY FFCVRDRKYP TGLRTNRATD SGYWKATGKD KEIYMGKSLV GMKKTLVFYQ 120 GRAPKGAKTN WVMHEYRLGG KFSIQNLPKT AKNEWVICRV FQKSSDGKKI PISSLVKASC 180 LSNELGPATG LPPLMDSSPY NGGKCEPVFA DSTYVPCFSN PIGPQANQQI TIDHNFNNRT 240 LHVSSNPCHV FPQNPFYAAD FESLGSVQEQ SMLRTLIENH GSKVQAEREI VRKPEMLSVV 300 SNRESGKKTF DDQHAPSSSS AGPVDLDCFW HY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-56 | 10 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-56 | 10 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-56 | 10 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-56 | 10 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-56 | 10 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-56 | 10 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-56 | 10 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-56 | 10 | 169 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-56 | 10 | 169 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 10 | 169 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847214 | 0.0 | KC847214.1 Gossypium hirsutum NAC domain protein NAC37 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017604999.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-132 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0B0PUH7 | 0.0 | A0A0B0PUH7_GOSAR; NAC domain-containing protein | ||||
STRING | Gorai.007G038100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25020 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-134 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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